Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0018 ATGGGTTTCTTTTCTCAAACATGGCTTTATTTCCCCTTTTATATTCTTCCCTTTCTTGCCCACTGCCTTTTGCTTCGTGTAGCATCGAGCTCTCTAAGCATTACCACAGATACAGAAGCTTTGATCTCATTTAAGTCTCAATTGAGCAATGATCCTCCTCACCCATTATCTTCATGGAGCCAGAGTTCATCGCCCTGCAACTGGACCGGCGTAATCTGCGACAGGCTTGGCCCCAGAGTGATTGCCTTAAACCTTTCGGGCTTGAGAATCTCAGGTCATTTAAGCCCTTATATAGGTAACTTGTCTTTCCTTCAGTCCCTCCAGTTGCAGGATAACCAATTCACAGGAGTGATTCCTGAGCAAATTGGCAATCTTTTTCGGTTGAGAACTCTAAACATGAGCTCTAACAGCATCGAAGGAAAGCTTCCTTCAAACATCAGTCGCTTGACTGAACTCCAAATGCTTGACTTGTCGTCTAACAAGATTGTTAGCCAAATTCCCGAAAATATTGGCCTCTTGACAAAGCTTCAAGTCCTGAAATTGGGAAGCAATAAACTCTTTGGTGCAGTTCCACCAAGTCTTGGAAATATTTCATCACTCACAAATATCAGTTTTGGCACCAACACTCTAAGTGGCTGGATTCCAGGTGAATTGGGTCGGCTTAAGAAATTGGTTGAGCTTGATCTCACTATCAACAATCTCACTGGGACTATTCCACCTTCTATATTTAATTTGTCTTCCCTAGTTAACTTGGCTTTAGCTTCCAACAATTTGTGGGGTGAGCTTCCTCAGGATGTTGGTGATAAACTTCCAAACCTCCTAGTGTTCAATTTCTGCTTTAATAGATTCACAGGCAGAATTCCTGGGTCTTTGCATAATCTCACCAACATTCGAGTCATCCGCATGGCTCACAACCTTTTGGAAGGAACAGTGCCACCGGGTCTCGGAAATCTCCCATTCCTTCGCATGTATAATATTGGGTATAATAGGATAGTCAACTCAGGAGACAGAGGTCTCGACTTCATTACTTCTTTGACGAACAGCACCGTCCTCAACTTTCTTGCAATCGATGGCAATAGGCTGGAAGGTGTAATTCCTGAGACCGTTGGCAATCTGTCCAAGGTCCTCTCAAAATTATACATGGGAGAGAATCGTTTCCAAGGAAACATACCCACCTCCCTTGCCCATCTTAGTGGCTTGAGTTTATTAAACTTGAGCTACAATGCCATCTCCGGAGAAATCCCACCTGAGTTAGGCCAATTAGAGGAACTGCAAGAGCTAATTCTGGCTGGAAATCATCTATCAGGAAGTATTCCAAACTCCCTTGGTAGTCTTCAAAAATTAAACCAAATTGATTTGTCAAGCAATAAGCTTGTAGGTAAAATACCCTTTAGTTTTGGCAATTTCCAAAACCTTCTCTCGATGGACTTATCTAACAACAAGCTCAATGGAAGCATACCCAAAGAAATACTGAATCTCCCAACTCTAAGCAATGTTTTAAATGTGTCGAAGAACTTTTTAAGTGGATCTTTGCCTCAAGAAATAGGGAATTTGATTAGAGTTGCTTCCTTAGACCTCTCTAACAACCTTTTATCTGGTAATATCCCCCGCTCAATCAAAAATTGTCTGAGTCTGGAAAATCTATTTTTGGCCAGGAATATGCTCTCAGGTCCGATTCCAGAAACACTTGGAGAGGTTAGAGGTTTGGAAACCCTGGACCTTTCCTCCAACCAACTCTCTGGTTCCATTCCTGTTGAACTTCAAAATCTAAATGCCCTTCAGTTGTTGAACCTCTCTTATAATCATTTAGAAGGAGCCATTCCCAGTGGAGTTTTCAAAAGTTTCACTGCTGTCTATTTAGAAGGCAATGGGAAACTTTGCTCGCTCTCCGCATGTGTCACTCGAGGCCATGGAAGAAAGATGCTCCAAATTTATATCATCATCCCTATTGTGGTATCGTTTATACTGTGTTTCATAATTGGCTTGCTGCTGTACGTAAAGAGCAGAAAATTAAAGGTAACAGCATCATCTGACACGATAAAGCCATATCATCCAATGGTCTCTTATGATGAGCTCCGTCAGGCAACTGGGAACTTCAGCCAGGATAATTTAATAGGATTTGGGAGCTTTGGTTCAGTCTATAGAGGCCATCTAAGTCAAGCGAGTACTGTTGCAGTCAAAGTCCTCGACACTTTAAGAACTGGTTCTTTGAAGAGTTTCTTTGCAGAGTGTGAGGCTTTGAGGAATATAAGGCATCGAAATCTGGTTAAGCTGATCACATCATGCTCTAGCATAGACTTTACAAACAATGAATTTCTGGCTCTGGTTTACGAGTTCCTATGTAATGGCAGCTTGGAAGATTGGATTAAGGGAAAGAGAAAGCATTCAAATGGAAATGGGTTGAACTTGATGGAGAGACTGAATATTGCCATTGATGTTGCTTGTGCATTGGATTATCTGCACAATGATAGTGGAATTCCTATTGTGCATTGTGATTTGAAGCCCGCCAACATTCTTTTGGATGAAGATACGACTGCAAAGGTGGGAGACTTCGGATTGGCTAGGCTGCTGATTGAAAGACCAACTAATATTCAAGTCTCAATAAGCTCCGCTCATGTCCTTAGAGGTTCAATTGGCTACATACCTCCAGAGTATGGATGGGGAGAAAAGCCATCAGTGGCCGGAGATGTATACAGTTTTGGAATTGTGTTGCTGGAGCTCTTTTCTGGGAAGAGCCCAACAGACGATAGCTTCACAGGAGGGCTAACCCTAAGAAGATGGGTGCAATCAGCACTTACAGAAAAGATAGTGCAAGTCATTGATCCTCAGATTCTATCACTCATTTTTAATAATGACCTCGCCAGAAGTCCTAATCTACAACTTGATTGTCTGATCGCAGTTCTCAGAGTTGGGTTAGCCTGCACCGCAGATTCTCCAGAGGGACGCCTTTGCATGAAAGATGCTGTTGGCAAACTAAAAGCTGCCAGAGACGCTCTTTTCAAACCCACTGAAAATAGGAGGCCTTCCCAGCATTAG 3036 0.4249 MGFFSQTWLYFPFYILPFLAHCLLLRVASSSLSITTDTEALISFKSQLSNDPPHPLSSWSQSSSPCNWTGVICDRLGPRVIALNLSGLRISGHLSPYIGNLSFLQSLQLQDNQFTGVIPEQIGNLFRLRTLNMSSNSIEGKLPSNISRLTELQMLDLSSNKIVSQIPENIGLLTKLQVLKLGSNKLFGAVPPSLGNISSLTNISFGTNTLSGWIPGELGRLKKLVELDLTINNLTGTIPPSIFNLSSLVNLALASNNLWGELPQDVGDKLPNLLVFNFCFNRFTGRIPGSLHNLTNIRVIRMAHNLLEGTVPPGLGNLPFLRMYNIGYNRIVNSGDRGLDFITSLTNSTVLNFLAIDGNRLEGVIPETVGNLSKVLSKLYMGENRFQGNIPTSLAHLSGLSLLNLSYNAISGEIPPELGQLEELQELILAGNHLSGSIPNSLGSLQKLNQIDLSSNKLVGKIPFSFGNFQNLLSMDLSNNKLNGSIPKEILNLPTLSNVLNVSKNFLSGSLPQEIGNLIRVASLDLSNNLLSGNIPRSIKNCLSLENLFLARNMLSGPIPETLGEVRGLETLDLSSNQLSGSIPVELQNLNALQLLNLSYNHLEGAIPSGVFKSFTAVYLEGNGKLCSLSACVTRGHGRKMLQIYIIIPIVVSFILCFIIGLLLYVKSRKLKVTASSDTIKPYHPMVSYDELRQATGNFSQDNLIGFGSFGSVYRGHLSQASTVAVKVLDTLRTGSLKSFFAECEALRNIRHRNLVKLITSCSSIDFTNNEFLALVYEFLCNGSLEDWIKGKRKHSNGNGLNLMERLNIAIDVACALDYLHNDSGIPIVHCDLKPANILLDEDTTAKVGDFGLARLLIERPTNIQVSISSAHVLRGSIGYIPPEYGWGEKPSVAGDVYSFGIVLLELFSGKSPTDDSFTGGLTLRRWVQSALTEKIVQVIDPQILSLIFNNDLARSPNLQLDCLIAVLRVGLACTADSPEGRLCMKDAVGKLKAARDALFKPTENRRPSQH 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0018 1011 ProSiteProfiles Protein kinase domain profile. 699 1011 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0018 1011 Gene3D Phosphorylase Kinase; domain 1 681 779 - -
Glsi03g0018 1011 Gene3D Transferase(Phosphotransferase) domain 1 780 1007 - -
Glsi03g0018 1011 FunFam Receptor protein kinase CLAVATA1 33 191 - -
Glsi03g0018 1011 Pfam Protein kinase domain 700 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0018 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 828 840 IPR008271 GO:0004672|GO:0006468
Glsi03g0018 1011 SMART LRR_typ_2 590 614 IPR003591 -
Glsi03g0018 1011 SMART LRR_typ_2 421 445 IPR003591 -
Glsi03g0018 1011 SMART LRR_typ_2 221 245 IPR003591 -
Glsi03g0018 1011 SMART LRR_typ_2 101 125 IPR003591 -
Glsi03g0018 1011 SMART LRR_typ_2 173 197 IPR003591 -
Glsi03g0018 1011 SMART LRR_typ_2 469 493 IPR003591 -
Glsi03g0018 1011 SMART LRR_typ_2 294 318 IPR003591 -
Glsi03g0018 1011 SMART LRR_typ_2 566 589 IPR003591 -
Glsi03g0018 1011 SMART LRR_typ_2 397 420 IPR003591 -
Glsi03g0018 1011 SMART LRR_typ_2 149 172 IPR003591 -
Glsi03g0018 1011 Gene3D Ribonuclease Inhibitor 33 183 IPR032675 -
Glsi03g0018 1011 Gene3D Ribonuclease Inhibitor 184 270 IPR032675 -
Glsi03g0018 1011 Gene3D Ribonuclease Inhibitor 271 336 IPR032675 -
Glsi03g0018 1011 Pfam Leucine rich repeat N-terminal domain 36 74 IPR013210 -
Glsi03g0018 1011 PRINTS Leucine-rich repeat signature 590 603 - -
Glsi03g0018 1011 PRINTS Leucine-rich repeat signature 569 582 - -
Glsi03g0018 1011 SUPERFAMILY RNI-like 226 617 - -
Glsi03g0018 1011 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 780 1005 - -
Glsi03g0018 1011 Gene3D Ribonuclease Inhibitor 337 634 IPR032675 -
Glsi03g0018 1011 ProSitePatterns Protein kinases ATP-binding region signature. 705 727 IPR017441 GO:0005524
Glsi03g0018 1011 Pfam Leucine rich repeat 104 162 IPR001611 GO:0005515
Glsi03g0018 1011 Pfam Leucine rich repeat 544 603 IPR001611 GO:0005515
Glsi03g0018 1011 SUPERFAMILY Protein kinase-like (PK-like) 680 990 IPR011009 -
Glsi03g0018 1011 FunFam LRR receptor-like serine/threonine-protein kinase EFR 338 635 - -
Glsi03g0018 1011 PANTHER LEUCINE RICH REPEAT KINASE 2 345 996 - -
Glsi03g0018 1011 ProSiteProfiles Leucine-rich repeat profile. 151 173 IPR001611 GO:0005515
Glsi03g0018 1011 SMART LRR_sd22_2 149 172 - -
Glsi03g0018 1011 SMART LRR_sd22_2 469 495 - -
Glsi03g0018 1011 SMART LRR_sd22_2 566 592 - -
Glsi03g0018 1011 SMART LRR_sd22_2 173 199 - -
Glsi03g0018 1011 SMART LRR_sd22_2 221 247 - -
Glsi03g0018 1011 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 231 337 - -
Glsi03g0018 1011 CDD STKc_IRAK 705 993 - -
Glsi03g0018 1011 SUPERFAMILY L domain-like 34 332 - -
Glsi03g0018 1011 FunFam LRR receptor-like serine/threonine-protein kinase EFR 670 779 - -
Glsi03g0018 1011 ProSiteProfiles Leucine-rich repeat profile. 568 591 IPR001611 GO:0005515
Glsi03g0018 1011 SMART serkin_6 699 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0018 Glsi-ChrGlsi03 231168 234345 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0018 36 1004 Receptor kinase-like Gene Family AT3G47570 42.987 0.0 734
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Glsi03g0018 Pkinase 5.1e-39 CL0016