Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0017 ATGGGTTTCTTTTCTCAAATATGGCTTCGTCTTCCCTCGTATATTCTTCCTTTTCTTATACACTGCCTTTTGCTTCGTGTAGCATCAAGCTCTTTAAGCATTACCACAGATACAGAAGCTTTGATCTCATTTAAGTCTCAATTGAGAATTGATCCTCCTCACCCATTATCTTCTTGGAGCCACAGTTCATCGCCCTGCAACTGGACTGGTGTAATCTGCGACAGGCTTGGCCCCAGAGTGATTGCCTTAAACCTTTCGGGCTTGAGACTCTCGGGTCATTTAAGCCCTTATATAGGTAACTTGTCTTTCCTTCAGTCCCTCCAGTTGCAGGATAACCAATTCACAGGAGTGATTCCTGAGCAAATTGGCAATCTTGTTCGGTTGAGAACTCTAAACATGAGTTCTAACAGCATCGAAGGAAAGATTCCTTCAAACATCAGTCGCTTGACTGAACTCCAAATCCTTGACTTGTCGTCTAACAAGATTGTTAGCCAAATTCCCGAAAATATTGGCCTCTTGACAAAGCTTCAAGTCCTGAAATTGGTAAGCAATAAACTCTTTGGTGAAGTTCCACCAAGTCTTGGAAATATTTCATCACTCACAAATGTCAGTTTAGGCACCAACACTCTAAGGGGCAGGATTCCAAGTGAATTGGGTCGGCTTAAGAAATTGGTTGAGCTTGATCTCACTATCAACAATCTCACTGGGACTATTCCACCTTCTATATTTAATTTATCGTCCCTAGTTCACTTGGCTTTAGCTTCCAACAATTTGTGGGGTGAGATTCCTCAGGATGTTGGTGATAAACTTCCAAAACTCCTAGTGTTCAGTTTCTGCTTTAATAGATTCACAGGCAGAATTCCTGGGTCTTTGCATAATCTCACCAACATTCGAGTCATCAGCATGTTTAACAACCTTTTGGAAGGAACAGTGCCACCGGGTCTTGGAAATCTCCCATTCCTTCGCCTGTATAGTATTGGGCATAATAGGATAGTCAACTCAGGAGACAGAGGTCTCGACTTCATTACTTCTTTGACGAACAACACCGTCCTAAACTATTTTGCAATTCAGGGCAATAGGCTGGAAGGTGTAATTCCTGAGACCATTGGCAATCTGTCCAAGGTCCTCTCAAAATTATACATGGGAGAGAATCGTTTCCAAGGAAACATACCCACCTCCCTTGCCCATCTTAGTGGCTTGAGTTTATTAAGCTTGAATTACAATGCCTTCTCCGGAGAAATCCCACCTGAGTTAGGCCAATTAGAGGAACTGCAAGAGCTAATTCTGGCTGGAAATCATCTATCAGGAAGTATTCCAAACTCCCTTGGCAGTCTTCAAAAGTTAAATGAAATTGATTTGTCAAGCAATGAGCTTCCCGCCAACATTCTTTTGGATGAAGATACGACTGCAAAGGTGGGAGACTTCGGATTGGCTAGGCTGCTGATTGAAAGACCAACTAATATTCAAGTCTCAATAAGCTCCACTCATGTCCTTAGAGGTTCAATTGGCTACATACCTCCAGAGTATGGATGGGGAGAAAAGCCGTCAGTGGCCGGAGATGTATACAGTTTTGGAATTGTGTTGCTGGAGCTCTTTTCTGGGAAGAGCCCAACAGACGATAGCTTCACAGGAGGCTTAAGCCTTAGAAGATGGGTGCAATCGTCACTTACAGAAAAGATAGTGCAAGTCATAGACCCTCAGCTTCTATCACTCATGTTTAATAATGACCTCGCCGAAAGACCCCATCTACAACTTGATTGTCTGATTGCAATTCTCGGAGTTGGGTTATCCTGCACTGCAGATTCTCCAGATAGACGCCTTAGCATGAAAGACGCTGTTGGCAAGATACGAGCTGCTAGAGACTCTCTTTTCAAACCCACTGCAAATAAGAGTTCTTCCCACCGTTAG 1908 0.4324 MGFFSQIWLRLPSYILPFLIHCLLLRVASSSLSITTDTEALISFKSQLRIDPPHPLSSWSHSSSPCNWTGVICDRLGPRVIALNLSGLRLSGHLSPYIGNLSFLQSLQLQDNQFTGVIPEQIGNLVRLRTLNMSSNSIEGKIPSNISRLTELQILDLSSNKIVSQIPENIGLLTKLQVLKLVSNKLFGEVPPSLGNISSLTNVSLGTNTLRGRIPSELGRLKKLVELDLTINNLTGTIPPSIFNLSSLVHLALASNNLWGEIPQDVGDKLPKLLVFSFCFNRFTGRIPGSLHNLTNIRVISMFNNLLEGTVPPGLGNLPFLRLYSIGHNRIVNSGDRGLDFITSLTNNTVLNYFAIQGNRLEGVIPETIGNLSKVLSKLYMGENRFQGNIPTSLAHLSGLSLLSLNYNAFSGEIPPELGQLEELQELILAGNHLSGSIPNSLGSLQKLNEIDLSSNELPANILLDEDTTAKVGDFGLARLLIERPTNIQVSISSTHVLRGSIGYIPPEYGWGEKPSVAGDVYSFGIVLLELFSGKSPTDDSFTGGLSLRRWVQSSLTEKIVQVIDPQLLSLMFNNDLAERPHLQLDCLIAILGVGLSCTADSPDRRLSMKDAVGKIRAARDSLFKPTANKSSSHR 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0017 635 SMART LRR_typ_2 421 445 IPR003591 -
Glsi03g0017 635 SMART LRR_typ_2 221 245 IPR003591 -
Glsi03g0017 635 SMART LRR_typ_2 101 125 IPR003591 -
Glsi03g0017 635 SMART LRR_typ_2 149 173 IPR003591 -
Glsi03g0017 635 SMART LRR_typ_2 294 318 IPR003591 -
Glsi03g0017 635 ProSiteProfiles Leucine-rich repeat profile. 151 173 IPR001611 GO:0005515
Glsi03g0017 635 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 373 462 - -
Glsi03g0017 635 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 231 338 - -
Glsi03g0017 635 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 459 614 - -
Glsi03g0017 635 FunFam Receptor protein kinase CLAVATA1 33 191 - -
Glsi03g0017 635 SUPERFAMILY L domain-like 269 458 - -
Glsi03g0017 635 Gene3D Ribonuclease Inhibitor 204 333 IPR032675 -
Glsi03g0017 635 Gene3D Ribonuclease Inhibitor 334 460 IPR032675 -
Glsi03g0017 635 ProSiteProfiles Protein kinase domain profile. 326 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0017 635 Gene3D Ribonuclease Inhibitor 34 193 IPR032675 -
Glsi03g0017 635 SMART LRR_sd22_2 125 148 - -
Glsi03g0017 635 SMART LRR_sd22_2 173 199 - -
Glsi03g0017 635 SMART LRR_sd22_2 149 172 - -
Glsi03g0017 635 SMART LRR_sd22_2 445 466 - -
Glsi03g0017 635 SMART LRR_sd22_2 221 247 - -
Glsi03g0017 635 SMART serkin_6 363 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0017 635 SUPERFAMILY Protein kinase-like (PK-like) 459 614 IPR011009 -
Glsi03g0017 635 Pfam Leucine rich repeat 104 162 IPR001611 GO:0005515
Glsi03g0017 635 Pfam Leucine rich repeat N-terminal domain 36 74 IPR013210 -
Glsi03g0017 635 Gene3D Transferase(Phosphotransferase) domain 1 461 632 - -
Glsi03g0017 635 SUPERFAMILY L domain-like 34 332 - -
Glsi03g0017 635 Pfam Protein kinase domain 459 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0017 Glsi-ChrGlsi03 224114 227294 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0017 459 635 Receptor kinase-like Gene Family AT5G20480 39.548 1.18e-28 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Glsi03g0017 Pkinase 5.1e-12 CL0016