Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0015 ATGCTTGACTTGTCGTCTAACAACATTGTTAGCCAAATTCCCGAAAATATTGGCCTCTTGACAAAGCTTCAAGTCTTGAAATTGGGAAGCAATAAACTCTTTGGTGCAGTTCCACCAAGTCTTGGAAATATTTCATCACTCACAAATATCAGTTTTGGCACCAACACTCTAGGTGGCTGGATTCCAAGTGAATTGGGTCGGCTTAAGAAATTGGTTGAGCTTGATCTCACTATCAACAATCTCACTGGGGCTATTCCACCTTCTATATTTAATTTATCGTCCCTAGTTCACTTGGCTTTAGCTTCCAACAATTTGTGGGGTGAGATTCCTCAGGATGTTGGTGATAAACTTCCAAAACTCCTAGTGTTCAATATCTGCTTTAATAGATTCACAGGCAGAATTCCTGGGTCTTTGCATAATCTCACCAACATTCGAGTCATCCGCATGGCTCACAACCTTTTGGAAGGAACAGTGCCATCGGGTCTTGGAAATCTCCCATTCCTTCGCATGTATAAAATTGGGTATAATAGGATAGTCAACTCAGGAGACAGAGGTCTCGACTTCATTACTTCTTTGACTAACAGCACCGTCCTCAACTTTCTTGCAATTGATGGCAATAGGCTGGAAGGTGTAATTCCTGAGACCATTGGCAATCTCTCCAAGGTCCTCTCAAAATTATACATGGGAGCGAATCGTTTCCAAGGAAACATACCCACCTCCCTTGCCCATCTTAGTGGCTTGAGTTTATTAAACTTGAGCTACAATGCCATCTCCGGAGAAATACCACCTGAGTTAGGCCAATTAGAGGAACTGCAAGAGCTAAATCTGGCAGGAAATCATCTATCAGGAAGTATTCCAAACTCCCTTGGTAGTCTTCAAAAGTTAAACCAAATTGATTTGTCAAGCAATAAGCTTGTAGGTAAAATACCCTCTAGTTTTGGCAACTTCCAAAACCTTCTTTCGATGGACTTATCTAACAACAAGCTTAATGGAAGCATACCCAAAGAAATACTGAATCTCCCCACTCTGAGCAATGTTTTAAATGTGTCTAAGAACCTTTTAAGCGGATCTTTGCCTCAAGAAGTAGGGATTTTGATTAGAGTTGCTTCCTTAGACTTCTCTAACAACCTTTTCACTGGTAACATCCCCCGCTCAATCAAAAATTGTCTGAGCCTCGAAAATCTATTTTTGGCCCGGAATATGCTTTCAGGTCCAATTCCAGAAACACTTGGAGAGGTCAGAGGCTTGGAAAACCTGGACCTTTCCTCCAACCAACTCTCTGGTTCCATTCCTGTTGAACTTCAAAATCTAAATGCCCTTCGGTTGTTGAACCTCTCTTCTAATAATTTAGAAGGAGCCATTCCCAGTGGTGGTGTTTTCAAAAATCTCTCTGCTGTCCATTTAGAAGGCAATAGGAGACTTTGTTCGCTCTCCGCATGTGTGACTCGAGGCCACGGAAGAAAGATGCTCCAAATTTATATCATCATACCTATTGTGGTATCATTTATACTGTGTTTCACAATTGGCTTGCTGCTGTACGTAAAGAGGAGAAAACTAAAGGTAGCAGCATCTGACATGATAAAGCGATATCATCCAATGGTCTCTTATGATGAGCTCCGTCAGGCAACTGGGAACTTCAGCCAGGATAATTTAATAGGAATTGGGAGCTTTGGTTCAGTCTATAGAGGCCATTTAAGTCAAGCGAGTACTGTTGCAGCCAAAGTCCTCGACACTTTAAGAACTGGTTCTTTGAAGAGTTTCTTTGCAGAGTGTGAGGCTTTGAAGAATGCAAAGCATCGAAATCTGGTTAAGCTGATCACATCATGCTCTAGCATAGACTTTACAAACAATGAATTTCTGGCTCTGGTTTACGAGTTCCTATGTAATGGCAGCTTGGAAGATTGGATTAAGGGAAAGAGAAAGCATTCAAATGGAAATGGGTTGAACTTGATGGAGAGACTGAATATTGCCATTGATGTTGCTTGTGCATTGGATTACCTGCACAATGATAGTGGAATTCCTATTGTGCATTGTGATTTGAAGCCCGCCAACATTCTTTTGGATGAAGATATGACTGCAAAGGTGGGAGACTTTGGATTGGCTAGGCTGCTGATTGAAAGACCAACTAATATTCAAGTCTCAATAAGCTCCGCTCATGTCCTTAGAGGTTCAATTGGCTACATACCTCCAGAGTATGGATGGGGAGAAAAGCCATCAGTGGCCGGAGATGTATACAGTTTTGGAATTGTGTTGCTGGAGCTCTTTTCTGGGAAGAGCCCAACAGACGATAGCTTCACAGGAGGGCTAACCCTAAGAAGATGGGCGCAATCAGCACTTACAGAAAATATAGTGCAAATCATTGATCCTCAGATTCTATCACTCATTTTTAATAATGACCTCGCCAGAAGTCCCAATCTACAACTTGATTGTCTGATCGCAGTTCTCAGAGTTGGGTTAGCCTGCACCGTAGATTCTCCAGAGGGACGCCTTGGCATGAAAGATGCTGTTGGCAAGCTAAAAGCTGCCAGAGACGCTCTTTTCAAACCCACTGAAAATAGGAGGCCTTCCCAGCATTAG 2577 0.423 MLDLSSNNIVSQIPENIGLLTKLQVLKLGSNKLFGAVPPSLGNISSLTNISFGTNTLGGWIPSELGRLKKLVELDLTINNLTGAIPPSIFNLSSLVHLALASNNLWGEIPQDVGDKLPKLLVFNICFNRFTGRIPGSLHNLTNIRVIRMAHNLLEGTVPSGLGNLPFLRMYKIGYNRIVNSGDRGLDFITSLTNSTVLNFLAIDGNRLEGVIPETIGNLSKVLSKLYMGANRFQGNIPTSLAHLSGLSLLNLSYNAISGEIPPELGQLEELQELNLAGNHLSGSIPNSLGSLQKLNQIDLSSNKLVGKIPSSFGNFQNLLSMDLSNNKLNGSIPKEILNLPTLSNVLNVSKNLLSGSLPQEVGILIRVASLDFSNNLFTGNIPRSIKNCLSLENLFLARNMLSGPIPETLGEVRGLENLDLSSNQLSGSIPVELQNLNALRLLNLSSNNLEGAIPSGGVFKNLSAVHLEGNRRLCSLSACVTRGHGRKMLQIYIIIPIVVSFILCFTIGLLLYVKRRKLKVAASDMIKRYHPMVSYDELRQATGNFSQDNLIGIGSFGSVYRGHLSQASTVAAKVLDTLRTGSLKSFFAECEALKNAKHRNLVKLITSCSSIDFTNNEFLALVYEFLCNGSLEDWIKGKRKHSNGNGLNLMERLNIAIDVACALDYLHNDSGIPIVHCDLKPANILLDEDMTAKVGDFGLARLLIERPTNIQVSISSAHVLRGSIGYIPPEYGWGEKPSVAGDVYSFGIVLLELFSGKSPTDDSFTGGLTLRRWAQSALTENIVQIIDPQILSLIFNNDLARSPNLQLDCLIAVLRVGLACTVDSPEGRLGMKDAVGKLKAARDALFKPTENRRPSQH 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0015 858 Pfam Protein kinase domain 547 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0015 858 SMART serkin_6 546 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0015 858 SUPERFAMILY Protein kinase-like (PK-like) 525 838 IPR011009 -
Glsi03g0015 858 FunFam LRR receptor-like serine/threonine-protein kinase EFR 517 626 - -
Glsi03g0015 858 PRINTS Leucine-rich repeat signature 416 429 - -
Glsi03g0015 858 PRINTS Leucine-rich repeat signature 437 450 - -
Glsi03g0015 858 ProSiteProfiles Leucine-rich repeat profile. 415 438 IPR001611 GO:0005515
Glsi03g0015 858 Pfam Leucine rich repeat 223 281 IPR001611 GO:0005515
Glsi03g0015 858 Pfam Leucine rich repeat 391 450 IPR001611 GO:0005515
Glsi03g0015 858 CDD STKc_IRAK 552 840 - -
Glsi03g0015 858 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 81 - -
Glsi03g0015 858 ProSitePatterns Protein kinases ATP-binding region signature. 552 574 IPR017441 GO:0005524
Glsi03g0015 858 FunFam LRR receptor-like serine/threonine-protein kinase EFR 185 483 - -
Glsi03g0015 858 PANTHER OS04G0122200 PROTEIN 66 837 - -
Glsi03g0015 858 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 82 184 - -
Glsi03g0015 858 ProSitePatterns Serine/Threonine protein kinases active-site signature. 675 687 IPR008271 GO:0004672|GO:0006468
Glsi03g0015 858 SUPERFAMILY L domain-like 222 478 - -
Glsi03g0015 858 Gene3D Transferase(Phosphotransferase) domain 1 627 854 - -
Glsi03g0015 858 SUPERFAMILY RNI-like 2 282 - -
Glsi03g0015 858 SMART LRR_typ_2 316 340 IPR003591 -
Glsi03g0015 858 SMART LRR_typ_2 244 267 IPR003591 -
Glsi03g0015 858 SMART LRR_typ_2 268 292 IPR003591 -
Glsi03g0015 858 SMART LRR_typ_2 20 44 IPR003591 -
Glsi03g0015 858 SMART LRR_typ_2 141 165 IPR003591 -
Glsi03g0015 858 SMART LRR_typ_2 68 92 IPR003591 -
Glsi03g0015 858 SMART LRR_typ_2 413 436 IPR003591 -
Glsi03g0015 858 SMART LRR_typ_2 437 462 IPR003591 -
Glsi03g0015 858 ProSiteProfiles Protein kinase domain profile. 546 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0015 858 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 627 852 - -
Glsi03g0015 858 Gene3D Phosphorylase Kinase; domain 1 509 626 - -
Glsi03g0015 858 Gene3D Ribonuclease Inhibitor 184 482 IPR032675 -
Glsi03g0015 858 Gene3D Ribonuclease Inhibitor 1 183 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0015 Glsi-ChrGlsi03 196442 199160 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0015 2 851 Receptor kinase-like Gene Family AT3G47570 42.202 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Glsi03g0015 Pkinase 3.1e-38 CL0016