Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0002 ATGGACGTCAACCCACCAGAAACCTCTTCTCAACACTATAAGAGAAAGCCCAAGAGAAAACGAAATCAGGAAGACCCACAACTTGAGCGGCTGAACTCACTGTCATGGAACCCATCTCTTCCCGAAGATGATGATCCTTTTTCTTTGCTTGTGGGCTCAAACGAACTTGAAGGAGGTTTTCTTTCACTGGAGGAGATTGACGAAGCTGCGTATGGTTTACAAATTCCTGATCCTGAAGAAGTACGTAGGAAGCAGAAGTCTAAACACAAAACAGATGTGAAGAAACAGAAGCCAGGTGAAGTTGAGGGTGCTTGCAATGACATGGCTGGAGCGAAGTTTGAAGGAAAAATGGTTAAGGATGAGGGCGTGATGTCTAATATGAAGAAAAAGAAGAAAAAAAAGGCAGCTGCTGGCCTAGTTACTAGCATGAAGGATGCTAATGGGGAAGAGGACATTGATGAAATGGAATTTTATGCATGGAATGAGTTGAGACTTCATCCTCTGCTCATGAAAGCAATATACAAGCTTGGCTTCAAGGAACCCACACCAATACAGAAAGCTTGTATTCCAGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGGGCTTCAGAGACAGGATCTGGGAAAACTCTTGCATTTGGTTTGCCCATTTTGCAACGCCTTTTAGAGGAGAGAGAAAAGGCTGCAAAGATACTTGAAGAAAAGGGTGAAGAAACAAACAAGTATGCTCCGACTGGCCTTCTGAGGGCTCTTATAATTGCTCCAACTAGGGAACTTGCACTTCAGGTCACTGATCATTTGAAAACAGTAGCCAGGTATATCAATGTTAGGGTAATCCCTATAGTTGGGGGCATTTTAACAGAAAAGCAGGAGAGACTTTTAAAAGCAAGGCCTGAGATTATTGTCGCAACTCCGGGGAGGTTATGGGAACTTATGTCAGCTGGAAAAAAGCATGTAGTTGAGTTACATTCTTTGTCATTCTTCGTTCTTGATGAGGCTGATCGAATGATACAAAATGGTCATTTCAAAGAGTTGCAATCAATAATTGACATGCTACCCATGTCCAACATGTCTGGAGAGGATAATTCTCAATCTGCACAAAATTGTATTACAGTTTCAAGCTACCAAAGAAAGAAAAGACAAACTCTAGTTTTTTCAGCAACTGTTGCACTATCTGCCGATTTTCGCAAGAAGTTAAAGCGTGGTTCAACAAAACAAAAGCAATCAATGGTGGATGGATTTAATTCCATTGAAACTCTTTCCGAACGTGCAGGAATGAGAGCCAATGCTGCAATCATTGATTTAACTAATCCATCAATATTAGCAGCCAAGCTTGAGGAATCATTTATTGAATGCAGGGAAGAAGATAAAGATGCTTATTTGTATTATATTTTGACTATTCATGGACAAGGACGAACAATAGTTTTCTGTACATCAATTGCAGCTTTGCGCCACATCTCTTCTTTACTACGCATTCTTGGCATTAATGCTTGGACTCTTCATGCCCAAATGCAGCAGCGAGCACGTTTAAAGGCCATTGATCGCTTTCGTGAAAATGAAAATGGCATACTCGTTGCTACTGATGTTGCAGCAAGGGGCCTTGATATTCCTGGTATTAGAACGGTTGTGCACTATCAGCTTCCACATTCAGCTGATGTTTATGTTCATAGAAGTGGAAGAACAGCCAGGGCTTCTGCTGAAGGTTGCAGCATTGCTTTAATCTCACCCAGAGATACAGCAAAGTTTGCTTCGCTGTGCAAGTCCTTTTCTAAGGATAATTTTCAGCGATTTCCTTTAGAGAATTCATACATGCCAGAGGTTCTAAAGCGACTGTCTATTGGGCGTCAAATAGACAAGATAATACGAAAGGATTCCCAGGAAAAAGCTCAGAAGAATTGGTTTGAAAGGAATGCTGAATCCGTGGAGTTAGTTGCTGAAAATTTTGACAGTGAGGAGGAAGGAGTGAAAAGATACAAGCAGATGAAAGCCAGCTCTACACTGTTGAAGAAATTGCAGCAGGAGCTCAATGTGCTGCTTTCACGTCCTTTACAATCAAAAACATTTTCACATCGATATTTAGCAGGGTCTGGTGTCACACCTCTCATGCAGGAACAGTTGCAACAATTAACCAGGCAAAAGCTAGGTGACCACCAAAGTTCAGGCGTAACTGGTAAGGGAAAATTGAGTGTGATTGGTCAAGATTGCGTGGAAGCACTTCAGGCACTGCGGAATGCTGGTGTAGAGGTGCGCATGGATGTCAAGGATATGACAGCAAAACGGATAAATACAGAGATTTTAAGAAGGAAGAGAAAAGAAGAGAAGAAACGTTTGCATGATCAGAGGAGAAAGCAGAGAAGAAGACTAAAAGGGGAGAATGAATAG 2382 0.4181 MDVNPPETSSQHYKRKPKRKRNQEDPQLERLNSLSWNPSLPEDDDPFSLLVGSNELEGGFLSLEEIDEAAYGLQIPDPEEVRRKQKSKHKTDVKKQKPGEVEGACNDMAGAKFEGKMVKDEGVMSNMKKKKKKKAAAGLVTSMKDANGEEDIDEMEFYAWNELRLHPLLMKAIYKLGFKEPTPIQKACIPAAAHQGKDVVGASETGSGKTLAFGLPILQRLLEEREKAAKILEEKGEETNKYAPTGLLRALIIAPTRELALQVTDHLKTVARYINVRVIPIVGGILTEKQERLLKARPEIIVATPGRLWELMSAGKKHVVELHSLSFFVLDEADRMIQNGHFKELQSIIDMLPMSNMSGEDNSQSAQNCITVSSYQRKKRQTLVFSATVALSADFRKKLKRGSTKQKQSMVDGFNSIETLSERAGMRANAAIIDLTNPSILAAKLEESFIECREEDKDAYLYYILTIHGQGRTIVFCTSIAALRHISSLLRILGINAWTLHAQMQQRARLKAIDRFRENENGILVATDVAARGLDIPGIRTVVHYQLPHSADVYVHRSGRTARASAEGCSIALISPRDTAKFASLCKSFSKDNFQRFPLENSYMPEVLKRLSIGRQIDKIIRKDSQEKAQKNWFERNAESVELVAENFDSEEEGVKRYKQMKASSTLLKKLQQELNVLLSRPLQSKTFSHRYLAGSGVTPLMQEQLQQLTRQKLGDHQSSGVTGKGKLSVIGQDCVEALQALRNAGVEVRMDVKDMTAKRINTEILRRKRKEEKKRLHDQRRKQRRRLKGENE 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0002 793 MobiDBLite consensus disorder prediction 74 103 - -
Glsi03g0002 793 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 158 186 IPR014014 GO:0003724
Glsi03g0002 793 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 444 605 IPR001650 -
Glsi03g0002 793 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 190 407 IPR014001 -
Glsi03g0002 793 Coils Coil 215 238 - -
Glsi03g0002 793 Coils Coil 661 681 - -
Glsi03g0002 793 SMART helicmild6 484 565 IPR001650 -
Glsi03g0002 793 SMART ultradead3 177 409 IPR014001 -
Glsi03g0002 793 MobiDBLite consensus disorder prediction 771 793 - -
Glsi03g0002 793 MobiDBLite consensus disorder prediction 1 51 - -
Glsi03g0002 793 CDD DEADc_DDX24 169 434 - -
Glsi03g0002 793 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 353 IPR027417 -
Glsi03g0002 793 Gene3D - 119 408 IPR027417 -
Glsi03g0002 793 CDD SF2_C_DEAD 445 574 - -
Glsi03g0002 793 Pfam DEAD/DEAH box helicase 182 390 IPR011545 GO:0003676|GO:0005524
Glsi03g0002 793 MobiDBLite consensus disorder prediction 771 785 - -
Glsi03g0002 793 Coils Coil 763 783 - -
Glsi03g0002 793 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 580 IPR027417 -
Glsi03g0002 793 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 329 337 IPR000629 -
Glsi03g0002 793 Pfam Helicase conserved C-terminal domain 456 564 IPR001650 -
Glsi03g0002 793 PANTHER RNA HELICASE 97 669 - -
Glsi03g0002 793 Gene3D - 442 685 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0002 Glsi-ChrGlsi03 15503 37144 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0002 159 605 Eukaryotic Initiation Factors Gene Family AT5G11200 26.271 9.49e-38 145