Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3925 ATGGAATTGGAGGACGACTTCGACATGCAAGATGCCAATGCTGGTGGGGAGACGGTAGATAATGAGGATGGTTTCTACAGCAGTGGCGAGGAGGAGGAGGTGGCCTTGTACAGTGACGATGGCGACGCGGCAGGTTTCAACTTCGTCGACAATGATTCCGGTGATTTCGAGGACACTGCCTTGTATCGTCACCAGCAAAACTATACCATCTTGAGTGAAAAGGATATTTGTCAACGTCAAGAGGAAGACGTTATGAGGATAACCACTGTGCTGTCCATTCCAAAGGTTGCAGCTAGTATGTTGCTTCGCTACTATAATTGGAATGTTGGTAAAGTACATGATGAATGGTTTGCAGATGAAGAAAAGGTTCGCAGAGCTGTTGGCCTGTTGGAGAAACCTGTTGCAGAATATACAAATGCTAGAGAGCTGACTTGTGGGATCTGTTTTGAAACCTATCCCCGTGATAAGATGCATGCTGCTGCTTGTGGCCATCCTTTTTGTAGCTCATGCTGGGCAGGTTATATTTGCATAGCCATCAATGATGGTCCTGGATGTTTGATGTTGAGATGTCCTGATCCATCATGTGGTGCTGCTGTTGGTCAAGATATGGTCAATTTATTGGCTTCTGATGAAGACAAACAGAAGTACTCTCGGTATTTTATTAGATCTTATATTGAGGACAACAGAAAGAAAAAATGGTGTCCTGCTCCTGGCTGCGATTACGCCGTGGACTTTGTTGTTGGGAATGGAAGTTATGATGTTACATGCCACTGCTCATATAGTTTCTGCTGGAAGTGCACTGAGGAAGCACATAGGCCTGTTGATTGTGGTACTGTGGCCAAATGGGTATTGAAGAATAGTGCTGAATCTGAAAATATGAATTGGATATTGGCCAATTCAAAACCTTGTCCAAAGTGTAAGCGACCAATTGAGAAAAATCACGGTTGTATGCATATTACATGCACACCACCTTGCAAGTTTGAATTTTGCTGGCTCTGCCTTGGTGCCTGGTATGAGCATGGTGAGAGAACAGGTGGTTTTTATGCCTGTAATCGATATGAAACAGCAAAACAGGAGGGAGTGTTTGATGAGGCTGAAAAACGAAGAGAGATGGCCAAGAACTCTCTTGAAAGATATACTCACTATTATGAAAGATGGGCAACCAACCAATCATCCAGACAAAAAGCTCTTGCTGACCTACAGCAAATGCAATCCGTGCATGTAAGCAATCTTCTTATTTAG 1242 0.4372 MELEDDFDMQDANAGGETVDNEDGFYSSGEEEEVALYSDDGDAAGFNFVDNDSGDFEDTALYRHQQNYTILSEKDICQRQEEDVMRITTVLSIPKVAASMLLRYYNWNVGKVHDEWFADEEKVRRAVGLLEKPVAEYTNARELTCGICFETYPRDKMHAAACGHPFCSSCWAGYICIAINDGPGCLMLRCPDPSCGAAVGQDMVNLLASDEDKQKYSRYFIRSYIEDNRKKKWCPAPGCDYAVDFVVGNGSYDVTCHCSYSFCWKCTEEAHRPVDCGTVAKWVLKNSAESENMNWILANSKPCPKCKRPIEKNHGCMHITCTPPCKFEFCWLCLGAWYEHGERTGGFYACNRYETAKQEGVFDEAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLQQMQSVHVSNLLI 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3925 413 ProSiteProfiles Zinc finger RING-type profile. 145 189 IPR001841 -
Glsi02g3925 413 CDD Rcat_RBR_ARI7-like 299 353 - -
Glsi02g3925 413 FunFam RBR-type E3 ubiquitin transferase 139 228 - -
Glsi02g3925 413 Pfam IBR domain, a half RING-finger domain 214 276 IPR002867 GO:0008270
Glsi02g3925 413 Pfam IBR domain, a half RING-finger domain 293 341 IPR002867 GO:0008270
Glsi02g3925 413 CDD RING-HC_ARI6-like 142 203 - -
Glsi02g3925 413 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 65 406 IPR031127 GO:0004842|GO:0016567
Glsi02g3925 413 SUPERFAMILY RING/U-box 295 343 - -
Glsi02g3925 413 MobiDBLite consensus disorder prediction 1 26 - -
Glsi02g3925 413 SUPERFAMILY RING/U-box 141 226 - -
Glsi02g3925 413 SUPERFAMILY RING/U-box 215 283 - -
Glsi02g3925 413 CDD BRcat_RBR_ANKIB1 221 285 - -
Glsi02g3925 413 Gene3D - 272 411 - -
Glsi02g3925 413 ProSiteProfiles TRIAD supradomain profile. 141 354 IPR044066 -
Glsi02g3925 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 223 IPR013083 -
Glsi02g3925 413 SMART ibrneu5 214 276 IPR002867 GO:0008270
Glsi02g3925 413 SMART ibrneu5 280 350 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3925 Glsi-ChrGlsi02 85398120 85435996 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3925 19 411 ARIADNE family AT1G65430 73.350 0.0 614