Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3899 ATGTTCAAATTCTTGAAAGAGGTGGTGGGTGGATCTGGAGCCGGACTCAGAGATCTCCCATACAATATCGGCCAACCCTATCCTTCTGCTTGGGGCTCTTGGACTCACTACCGCGGTACCACCAAGGATGATGGGTCTCCAGTTTCAATCTTTTCTCTGTCTGGGAGTAATGCTCAGGATGGGCATTTAGCTGCTGGTCGTAATGGAGTCAAGCGTCTCCGGACTGTCAGACATCCAAATATTTTGTCATTTCTCCATAGTACTGAGACTGAAACTTCAGATGGTGGTTCTGCCAAGGTTACAATCTATATTGTAACAGAGCCTGTGATGCCACTTTCGGAAAAGATTAAGGAGTTAGGACTAGAAGGTACACAAAGGGATGAATACTATGCTTGGGGGCTGCATCAAATCGCGAAGGCTGTGAGCTTCTTAAATAATGATTGTAAACTCGTTCATGGTAATGTTTCCTTGGCCAGTGTTGTTGTTACACAAACTTTGGACTGGAAACTCCATGCTTTTGATGTCCTATCGGAATTTGATGGGAGCAATGAAGCTTCTGCTGGGCAAATGCTGCAATATGCATGGCTTGTTGGATCACAATACAAACCAATGGAGTTGGTAAAATCTGACTGGGCTGCAATAAAAAAGTCTCCTCCATGGGCCATTGATTCTTGGGGCATGGGTTGTCTTATCTATGAGCTATTCTCGGGCACGAGCTTGGGCAAAACGGAGGAGTTACGCAACACTGCCTCCATTCCCAAGTCTCTGCTTCCAGATTACCAGCGGCTATTGAGTTCCATGCCTTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGTGAATATTTTCAAAATAAGTTGGTAGACACAATTCACTTCATGGAAATTCTGAGTTTGAAAGACAGTGTCGAGAAAGACACCTTCTTCCGCAAACTTCCAAATTTAGCAGAGCAACTTCCTCGCCAGATTGTGTTGAAGAAGTTACTACCTTTATTAGCTTCTGCTCTTGAATTTGGTTCAGCTGCTGCCCCTGCTTTGACAGCATTGCTGAAAATGGGTTCCTGGCTTTCGGCCGAGGAATTTAGTATCAAGGTTCTTCCAACAATTGTAAAACTTTTTGCCTCTAATGACCGAGCCATTCGAGTTTCCCTTCTTCAACATATTGATCAATATGGAGAATCATTATCAGCACAGATTGTTGATGAGCAGGTTTACCCTCATGTTGCTACTGGGTTCTCTGACACGTCTGCTTTTCTGAGGGAACTGACTCTTAAGGCCATGCTTATATTGGCTCCGAAGCTATCTCAAAGGACCATTTCAGGGTCATTATTGAAGTATCTGTCTAAGTTACAGGTTGATGAAGAGCCAGCAATTCGAACTAATACTACCATCTTACTAGGAAATATTGCAAGCTACCTAAATGAAGGGACAAGAAAGAGAGTCTTGATAAATGCATTTACAGTTCGTGCATTACGTGATACTTTTCCCCCTGCTAGAGGAGCAGGCATTATGGCTCTATGTGCCACCAGCTCCTATTATGATGTCACTGAAGTTGCGACCCGTATTCTTCCTAATGTTGTTGTACTCACAATTGATCCCGACAGTGATGTTCGATCCAAGGCATTTCAAGCTGTTGATCAATTTTTGCAGGCAGTGAAGCAATGCTATGAAAAGACAAATGCTGCAGATACCACGGGGGCTGTGGGCATGGGAATCTCATCAATTCCAGGAAATGCTAGTTTACTTGGATGGGCTATGAGTTCCTTGACCCTGAAGGGTAAACCTTCTGATCATGCTCCAGTTGCTTCTGTAAGTTCCAACACACTTACTCCAGCGTCTTCCAATGCCAGTCCAGTTATAGATAATCCATCAACAGCACCTGTCCGTATAAGCTCTACCACTGATTTAGCTGAAAACCCTGTCCCTGCATCCCCTACATCAACGGATGGCTGGGGAGAATTGGAGAATGGAATTCATGAAGACCTTGAAAATGACAAGGATGGTTGGGATGATCTGGAGCCACTTGAAGAGCCAAAGCCATCTCCAGCTCTTGCAAATATTCAAGCAGCTCAAAGGCGGCCGGTCTCTCAACCTTTTTCACAGACAAAACTAGCCTCAACTTTGCGACCAAAAAGTGTAACAAAGTCGAGCAAGGATGAGGATAATGATTTATGGGGCTCCATAGCAGCTCCTGCTCCAAAAACATCAAAATCTTTAGATGTTAAACCAACTGCAACTGATGATGATGATCCCTGGGCTGCCATTGCTGCCCCAGCACCCACTACTAAAGCCAAACCCTTACTGGCTGGCAGAGGTCGGGGAGCTAAACCTACTGCTCCAAAATTAGGTGCTCAAAGGATAAACCGGACGTCATCTGGAATGTAA 2388 0.4439 MFKFLKEVVGGSGAGLRDLPYNIGQPYPSAWGSWTHYRGTTKDDGSPVSIFSLSGSNAQDGHLAAGRNGVKRLRTVRHPNILSFLHSTETETSDGGSAKVTIYIVTEPVMPLSEKIKELGLEGTQRDEYYAWGLHQIAKAVSFLNNDCKLVHGNVSLASVVVTQTLDWKLHAFDVLSEFDGSNEASAGQMLQYAWLVGSQYKPMELVKSDWAAIKKSPPWAIDSWGMGCLIYELFSGTSLGKTEELRNTASIPKSLLPDYQRLLSSMPSRRLNTSKLIENSEYFQNKLVDTIHFMEILSLKDSVEKDTFFRKLPNLAEQLPRQIVLKKLLPLLASALEFGSAAAPALTALLKMGSWLSAEEFSIKVLPTIVKLFASNDRAIRVSLLQHIDQYGESLSAQIVDEQVYPHVATGFSDTSAFLRELTLKAMLILAPKLSQRTISGSLLKYLSKLQVDEEPAIRTNTTILLGNIASYLNEGTRKRVLINAFTVRALRDTFPPARGAGIMALCATSSYYDVTEVATRILPNVVVLTIDPDSDVRSKAFQAVDQFLQAVKQCYEKTNAADTTGAVGMGISSIPGNASLLGWAMSSLTLKGKPSDHAPVASVSSNTLTPASSNASPVIDNPSTAPVRISSTTDLAENPVPASPTSTDGWGELENGIHEDLENDKDGWDDLEPLEEPKPSPALANIQAAQRRPVSQPFSQTKLASTLRPKSVTKSSKDEDNDLWGSIAAPAPKTSKSLDVKPTATDDDDPWAAIAAPAPTTKAKPLLAGRGRGAKPTAPKLGAQRINRTSSGM 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3899 795 Gene3D Transferase(Phosphotransferase) domain 1 109 279 - -
Glsi02g3899 795 Pfam Protein kinase domain 37 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g3899 795 ProSiteProfiles HEAT repeat profile. 366 404 IPR021133 -
Glsi02g3899 795 Gene3D Phosphorylase Kinase; domain 1 13 107 - -
Glsi02g3899 795 MobiDBLite consensus disorder prediction 691 713 - -
Glsi02g3899 795 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 9 771 - -
Glsi02g3899 795 MobiDBLite consensus disorder prediction 690 795 - -
Glsi02g3899 795 Gene3D - 282 559 IPR011989 -
Glsi02g3899 795 ProSiteProfiles HEAT repeat profile. 523 561 IPR021133 -
Glsi02g3899 795 SMART serkin_6 37 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g3899 795 ProSiteProfiles Protein kinase domain profile. 2 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g3899 795 MobiDBLite consensus disorder prediction 662 681 - -
Glsi02g3899 795 SUPERFAMILY ARM repeat 293 554 IPR016024 -
Glsi02g3899 795 MobiDBLite consensus disorder prediction 601 652 - -
Glsi02g3899 795 MobiDBLite consensus disorder prediction 596 656 - -
Glsi02g3899 795 SUPERFAMILY Protein kinase-like (PK-like) 34 287 IPR011009 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3899 70 291 MAP Kinase Kinase Kinase AT5G66850 24.895 7.18e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK SCY1_SCYL1 Glsi02g3899 Pkinase 3.6e-09 CL0016