Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3892 ATGGATTTCGATGCCGCAATTACTATGTCCCGAGCGGCCCTCTCCGACTCACCCTCCCTCTCCCAAGATGCAATGTGGCAAATGAAATTTAGATCAAGTGAAACTATGGAATCTGGACCTTATCCTGAGCGGCCCGGAGAATCAGATTGTTCATACTACATCAGAACAGGCCTTTGTAGATTTGGGGCAACATGTCGATTTAATCATCCTCCTAACAGGAAGCTGGCTATTGCTACTGCAAGGATGAAAGGCGAGTTCCCAGAAAGAATAGGACAGCCCGAATGTCAGTACTATCTGAAGACAGGAACTTGCAAGTTTGGAGCCACATGCAAGTTTCATCACCCAAGAGAAAAGGCTGGGGTTGCTGGACGAGTTGCCTTAAATAGCATAGGCTATCCACTTCGCCCAAATGAGCCTGAGTGTGCTTATTATTTGAGAACTGGACAATGCAAGTTTGGGAGCACTTGCAAATTCCACCATCCTCAGCCGAATAATATGATGGTTTCATTGCGGGGTTCTCCTGTTTATCCTACTATTCATTCTCCAACTACACCAGGTCAGCAGTCATCATATGCAGGGGGAATTACAAATTGGTCCAGAGCTGCTTATATTCCTAGTCCACGCTGGCAAGGCCCTTCAAGCTATGCGCCTTTAATTCTACCTCAGGGAGTGGTTTCAGTCCCTGGGTGGAGTGCATACAGTGGTCAGATGGGATCGATCTCCACTTCAGACAGTCCACAGCAAACAATGGGAAATGGTCAAATCTATGGAACTTCCCGCCAGGGGGATCCAGCAAATGCAGGATCTCCTGGGGCATATTCTCAATTACGATCTGGCTCTGTTCCTCTGGGGTTCTATGCGCTGCAGAGGGAGAACATATTTCCTGAGAGACCCGGCCAGCCTGAATGCCAATTCTACATGAAGACTGGAGATTGTAAGTTTGGTGCAGTCTGTCGGTTCCATCATCCACGTGAGAGGCTAATTCCTGCACCTGACTGTGTTTTGAGTCCCTTAGGCCTTCCTTTACGTCAAGGAGAGCCTTTATGTGTCTTCTATTCACGTTATGGCATATGCAAATTCGGCCCAAGTTGCAAGTTTGATCATCCAATGGGAATCTTCGCATACAATATATCTGCATCACCTTCAGCTGATCCCCCAGTCCGTCGTCTTTTAGGGTCTTCATCAGGAACTGCTGCATTAAATTTATCATCAGAAGCACTAGTTGAATCAGGCTCGGTGAAGCCCAGGCGGCTTACATTGTCAGAGTCTAGACAGATTTCTTCTGGCGAAGATAACATTGATGACGAGGGATGA 1314 0.4726 MDFDAAITMSRAALSDSPSLSQDAMWQMKFRSSETMESGPYPERPGESDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPREKAGVAGRVALNSIGYPLRPNEPECAYYLRTGQCKFGSTCKFHHPQPNNMMVSLRGSPVYPTIHSPTTPGQQSSYAGGITNWSRAAYIPSPRWQGPSSYAPLILPQGVVSVPGWSAYSGQMGSISTSDSPQQTMGNGQIYGTSRQGDPANAGSPGAYSQLRSGSVPLGFYALQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPAPDCVLSPLGLPLRQGEPLCVFYSRYGICKFGPSCKFDHPMGIFAYNISASPSADPPVRRLLGSSSGTAALNLSSEALVESGSVKPRRLTLSESRQISSGEDNIDDEG 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3892 437 ProSiteProfiles Zinc finger C3H1-type profile. 297 325 IPR000571 GO:0046872
Glsi02g3892 437 SUPERFAMILY CCCH zinc finger 48 72 IPR036855 GO:0046872
Glsi02g3892 437 FunFam Zinc finger nuclease 2 43 120 - -
Glsi02g3892 437 Gene3D - 43 126 - -
Glsi02g3892 437 Gene3D - 295 376 - -
Glsi02g3892 437 ProSiteProfiles Zinc finger C3H1-type profile. 44 72 IPR000571 GO:0046872
Glsi02g3892 437 MobiDBLite consensus disorder prediction 237 265 - -
Glsi02g3892 437 SUPERFAMILY CCCH zinc finger 138 163 IPR036855 GO:0046872
Glsi02g3892 437 PANTHER PROTEIN PHOSPHATASE RELATED 23 390 - -
Glsi02g3892 437 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Glsi02g3892 437 SUPERFAMILY CCCH zinc finger 93 118 IPR036855 GO:0046872
Glsi02g3892 437 ProSiteProfiles Zinc finger C3H1-type profile. 343 371 IPR000571 GO:0046872
Glsi02g3892 437 SUPERFAMILY CCCH zinc finger 301 327 IPR036855 GO:0046872
Glsi02g3892 437 MobiDBLite consensus disorder prediction 237 271 - -
Glsi02g3892 437 Gene3D - 132 183 - -
Glsi02g3892 437 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Glsi02g3892 437 SMART c3hfinal6 297 324 IPR000571 GO:0046872
Glsi02g3892 437 SMART c3hfinal6 343 370 IPR000571 GO:0046872
Glsi02g3892 437 SMART c3hfinal6 135 162 IPR000571 GO:0046872
Glsi02g3892 437 SMART c3hfinal6 44 71 IPR000571 GO:0046872
Glsi02g3892 437 SUPERFAMILY CCCH zinc finger 346 370 IPR036855 GO:0046872
Glsi02g3892 437 ProSiteProfiles Zinc finger C3H1-type profile. 135 163 IPR000571 GO:0046872
Glsi02g3892 437 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 162 IPR000571 GO:0046872
Glsi02g3892 437 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 299 324 IPR000571 GO:0046872
Glsi02g3892 437 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 345 370 IPR000571 GO:0046872
Glsi02g3892 437 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 92 116 IPR000571 GO:0046872
Glsi02g3892 437 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 46 71 IPR000571 GO:0046872
Glsi02g3892 437 MobiDBLite consensus disorder prediction 409 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3892 Glsi-ChrGlsi02 85153945 85159752 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3892 25 435 C2H2 Transcription Factor Family AT3G02830 60.714 2.91e-177 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi02g3892 zf-CCCH 6.2e-09 CL0537