LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi02g3886	ATGGGAGAAAGCGCAGGGTTTCCGGGCTTTTGTGCTTCCCCGGATAGACGGAGCATCGCCCAAAGAAGGGGTTTCAATTCCAATGCTGCCATAATCAATACGCCCCGCTTTCGCACCTCTAGTCCTTTGGCTTCTCCCGCAGTTCGTTCGCCCTGTCTCACTATACCCCCCGGTATCAGCCCCACCGCCTTGCTTGACTCTCCCATTATGCTTCCTAATTCTCAGGCAATGCCATCTCCCACCACTGGAACTTTTCTGCTGCCTCCTCTCAGTCATGAAGGATCGATACTGACTTCTGTGACTCCCGAAGAAGGGGATGGGGGCAGTGGTACTGATGTTGGTTCATCTATCAAGCTCAAGCTCCAAGAGGATCCTAATCCTGTACTTGTCTGCTCTGGTTCAGAAAATCAGGTTTCTAATCATTGCATTATGGCAAAGGGAGGAAAAGCAGACTGCCAACCACTTGTGCCAATTCAACCGCCATTGGATTTTGCAATTTCAGCAGAGTTTCCAAAAGGACATACTATAACAAAAAGTGAAGTCCATTTCTATGATGATGTGAAAATGATAAATGATGCACTTGGTAGTGCTAACAATGTTGAGATGCAGATGCATCATTCTGAGGAAGCCACTGACGAAAGCTCTCTGCCTAAAAATGCTACTCATAGCAAGGATATTGGACAGCATCATCTTTTAGAAGGAAACAAGAGAGAGACATCCCATACAATGGGAATGGTAAGGACCTCAGAGGATGGATACAATTGGAGAAAATATGGACAAAAGCAGGTAAAAGGTAGTGAATATCCTAGGAGCTATTACAAGTGTACCAATCCTAATTGTCAAGTCAAGAAAAAGGTGGAACGATCCCTTGATGGCCAAATAACCGAAATTATCTACAAGGGTACGCATAATCATTCAAAACCTCATCCTAGTCGCCGACCATCATTTGGAGCATCACTTCCCACTGATGAGATGTCAAACATGGGTGAAGGTAGTGGAACCTGTGTCAAAGTTGATGGTGATTCAGTTTGGACAAATATTCAGTCAAGGATGAAGGATATAAAATACAATTTAGATTGGAAGGCTGATGGTCAGGAAAGGACATCCTCCACATCTGTTGTAACTGAACTCTCAGATCCTATATCAACTAAAAAAGGTAAACCTACTTGTATGTTTGAATCAGGGGACAATCCAGAGCTTTCTTCAACACTTGCTAGTCATGATGATGATGAAGATGGAGCAACTCAAGGAAGCATATCACCTGAAGAGGATGCAGATGATGATGAATCTGAGTCAAAAAGAAGGAAGAAAGAGGGCTGCTTGATTGAGTCAAATTTCACTTCTAGGGCTGTCCGCGAGCCAAGGGTTGTGGTCCAAATTGAGAGTGAAGTGGACATACTTGATGATGGTTATCGCTGGCGAAAGTATGGACAGAAAGTTGTCAAGGGGAATCCTAACCCCAGGAGCTACTACAAATGCACAAGTGCTGGATGTTCTGTAAGGAAACATGTGGAAAGGGCTTCACACGATCTAAAATTTGTAATTACCACTTATGAGGGAAAACATAACCATGAGGTGCCCACTGCTAGAAGCAACAATCAGATGAGCTCAAGCGGTGCTTGTGTACTTCCAAGCGCTGCAAATACACAAGTGGCTCTTCCTTTACCTGGGAATGTTAGTATTCCCAAGCCTGGAACTCAAGTTCAAAACTTTGCACCTCATTTTGATAGAAAACCTGAATTTAGCAACGAGTTGCTAAGGCCTGGTTTTGTTGGAAATTTTAATGATGATATGAAATTTGGTTCTTCCTCCATTTGCCAAATGAAGTATTCTACCTTGAGTAATACCATGCCTTATGGCTCCTATGAACTGAATCCTGACCGTTGTGCTACCCCTCAAGCTGGTTCTATTGCCTCAGTGTTCCCTGACTTCCCAATGTCACTGCCGTTGAGTCTTCCCTCGTCTGGAAATTTTCCTCTGGCTGGACTTAATTTTAACTGTGTAAAGCCAATGGGTCCAGTCCAGTCTTTTCTTTCAGGGCAGCAGCTGAAGGAAGTTGATACAGGTTTCCTGAGGCCTAAACAAGAGCAGAAGGCATATGATACATGCATACCTCTAACATTTGATCATGCAAGTTCTTCACTCTCTTCATCGTCAACATCATCGTCAGTACATCATGGAGTTATGCAAAATTTTCCTTCATAA	2205	0.4363	MGESAGFPGFCASPDRRSIAQRRGFNSNAAIINTPRFRTSSPLASPAVRSPCLTIPPGISPTALLDSPIMLPNSQAMPSPTTGTFLLPPLSHEGSILTSVTPEEGDGGSGTDVGSSIKLKLQEDPNPVLVCSGSENQVSNHCIMAKGGKADCQPLVPIQPPLDFAISAEFPKGHTITKSEVHFYDDVKMINDALGSANNVEMQMHHSEEATDESSLPKNATHSKDIGQHHLLEGNKRETSHTMGMVRTSEDGYNWRKYGQKQVKGSEYPRSYYKCTNPNCQVKKKVERSLDGQITEIIYKGTHNHSKPHPSRRPSFGASLPTDEMSNMGEGSGTCVKVDGDSVWTNIQSRMKDIKYNLDWKADGQERTSSTSVVTELSDPISTKKGKPTCMFESGDNPELSSTLASHDDDEDGATQGSISPEEDADDDESESKRRKKEGCLIESNFTSRAVREPRVVVQIESEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCSVRKHVERASHDLKFVITTYEGKHNHEVPTARSNNQMSSSGACVLPSAANTQVALPLPGNVSIPKPGTQVQNFAPHFDRKPEFSNELLRPGFVGNFNDDMKFGSSSICQMKYSTLSNTMPYGSYELNPDRCATPQAGSIASVFPDFPMSLPLSLPSSGNFPLAGLNFNCVKPMGPVQSFLSGQQLKEVDTGFLRPKQEQKAYDTCIPLTFDHASSSLSSSSTSSSVHHGVMQNFPS	734

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi02g3886	734	FunFam	WRKY transcription factor	237	309	-	-
	Glsi02g3886	734	ProSiteProfiles	WRKY domain profile.	462	527	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi02g3886	734	MobiDBLite	consensus disorder prediction	205	248	-	-
	Glsi02g3886	734	FunFam	WRKY transcription factor 33	454	520	-	-
	Glsi02g3886	734	MobiDBLite	consensus disorder prediction	363	379	-	-
	Glsi02g3886	734	Gene3D	WRKY domain	235	309	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Glsi02g3886	734	SUPERFAMILY	WRKY DNA-binding domain	460	527	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Glsi02g3886	734	Gene3D	WRKY domain	454	520	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Glsi02g3886	734	MobiDBLite	consensus disorder prediction	302	334	-	-
	Glsi02g3886	734	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	188	540	IPR044810	GO:0003700
	Glsi02g3886	734	ProSiteProfiles	WRKY domain profile.	244	308	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi02g3886	734	SUPERFAMILY	WRKY DNA-binding domain	246	308	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Glsi02g3886	734	MobiDBLite	consensus disorder prediction	363	439	-	-
	Glsi02g3886	734	MobiDBLite	consensus disorder prediction	205	237	-	-
	Glsi02g3886	734	Pfam	WRKY DNA -binding domain	250	305	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi02g3886	734	Pfam	WRKY DNA -binding domain	468	525	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi02g3886	734	SMART	WRKY_cls	467	526	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi02g3886	734	SMART	WRKY_cls	249	307	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi02g3886	Glsi-ChrGlsi02	85131437	85135597	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi02g3886	41	531	WRKY Transcription Factor Family	AT4G26640	38.956	5.13e-92	295

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Glsi02g3886		WRKY	1.4e-24	CL0274