Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3880 ATGAGCACCCGCCGGTTCCCATTGAGACCGATGAAAAGAAACATGATCGCCATCCATACCGAAGGCCATTATATCAAAAATTGCCTGCTTAATGTCAATAGTGTCCGAACACGATACGATCCGTTCTGTGCATCTCTCTCTCTCAGTCGTTCATCCCAATCAAGCGCAGAGTTTCAGACTCGCTCATCAAAAGATCCATTCTCGAATTGGTTTATGAGCTCGAAGGAGAGACCCACTCTTGGAGGTACGCGGATTAAGACCCGCAAACGGAATATTGCAGCGCCACTGGACCCTGCAGCATTTTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTGGAACTTATTGCAAAGACCATTGAGTCCGCTGACCTTAACTTCTCAAGATACGGTGATACCTTTTTTGAGGTTGTTTTCACTGGGGGGCGTACACAACCTGGAACTACCAAACCTGATGAGGGGGAGCGCCATCCTTACTCTATAATAGAGTGTGAGCCAAAGCGTGAAGTCATATCACCGTCTGTAATCTACATACAAAAGATTTTGCGGCGAAAGCCATTTCTTATTAAGAATCTTGAAAATGTCATGCGGAAATTTCTGCAATCCTTGGAGCTTTTTGAGGAAAATGAGAGGAAGAAGTTGGCAATCTTTACAGCACTTGCATTCTCCCAGAAGCTATCTGGTCTTCCACCAGAGACTGTGTTCCAGCCACTTCTCAAAGATAATCTTGTGGCCAAAGGGCTAGTTCTGTCATTTATAACTGACTTCTTTAAGGAGTATCTGATTGACAACAGCCTTGATGATCTTATTTCAATTCTGAAGCGGGGAAAAGTGGAGGACAATCTTTTGGATTTCTTCCCTCCTGCAAAAAGATCTAATGATGCTTTCTCTGAGCATTTCAACAAAGAAGGACTGGCAGCCTTGGTCGAGTATAATGAGAAGAAAATATTTGAGGTGAAACTTAAGGAAATGAAATCTGCTTTAACAACACAGATAACAGAGGAAGTTGATATATCTGAAGTCATAGAAACTGTTAAGGTTCGAGTTAGAGATGCTAAGTTGCCAGACACTGAGATTGTGAGGGTTTTGTGGGACGTCTTAATGGATGCTGTTCAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTGCGCCAGGTAAAAACTTGGGCAAAATTATTGAATACTTTCTGCACCAGTGGGAAACTTGAGCTGGAACTTATGTACAAAGTACAGATGCAATGCTATGAGGATGCTAAATTGATGAAGCTCTTCCCTGAGATTGTTAGGTCTCTTTATGACCAAGATGTGCTGGCTGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACACCAAGGGAAGGCAAACCTTTGTGAAGGCACTGGAACCGTTTGTTAATTGGCTGGAGGAGGCAGAAGAGGAAGAATAA 1449 0.4306 MSTRRFPLRPMKRNMIAIHTEGHYIKNCLLNVNSVRTRYDPFCASLSLSRSSQSSAEFQTRSSKDPFSNWFMSSKERPTLGGTRIKTRKRNIAAPLDPAAFSDAVVQIYLDNAGDLELIAKTIESADLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHPYSIIECEPKREVISPSVIYIQKILRRKPFLIKNLENVMRKFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGLVLSFITDFFKEYLIDNSLDDLISILKRGKVEDNLLDFFPPAKRSNDAFSEHFNKEGLAALVEYNEKKIFEVKLKEMKSALTTQITEEVDISEVIETVKVRVRDAKLPDTEIVRVLWDVLMDAVQWSGKNQQQNANAALRQVKTWAKLLNTFCTSGKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILHWFRKGTNTKGRQTFVKALEPFVNWLEEAEEEE 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3880 482 Pfam eIF4-gamma/eIF5/eIF2-epsilon 409 482 IPR003307 GO:0005515
Glsi02g3880 482 Coils Coil 192 212 - -
Glsi02g3880 482 Gene3D - 313 482 - -
Glsi02g3880 482 SMART 542_3 396 481 IPR003307 GO:0005515
Glsi02g3880 482 PANTHER BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN 73 482 - -
Glsi02g3880 482 CDD W2_eIF5C_like 287 475 IPR043510 -
Glsi02g3880 482 FunFam ARM repeat superfamily protein 314 482 - -
Glsi02g3880 482 ProSiteProfiles W2 domain profile. 317 482 IPR003307 GO:0005515
Glsi02g3880 482 SUPERFAMILY ARM repeat 324 479 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3880 Glsi-ChrGlsi02 85099106 85115580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3880 371 478 Eukaryotic Initiation Factors Gene Family AT2G34970 31.818 7.55e-09 56.2