Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3878 ATGAATTGTTTCCCGTGTTTTAGCTCCCAGAAAAGTAAGAAAAGCCATAGCAAGAGGGAGCATGGGTCTCCACAACAGGACAATGTTACATCAAGAACACCGGATGACGGAAACCCAGTTGAAAATGCAAATTTTAAAGCGCAAACATACACTTTCCGGGAGCTAGCAACTGCAACCAAGAATTTCCGCCAGGAATGCCTGTTGGGAGAAGGTGGGTTTGGCAGAGTCTACAAGGGCACCATTCCAGCAACCGGGCAGGTCGTAGCTGTGAAGCAACTTGACCGAAATGGGATGCAAGGGAATAAGGATTTTCTGGCTGAGGTTTTGGCTTTAAGTCACTTGAACCATGAAAATCTGGTCAATCTCGTTGGTTATTGTGCTGATGGGGATCAACGTCTTTTGGTGTATGAATTCATGTCCGGGGGTTCTCTGGAAGACCGTATTCTTGACAATAAATCAAATCAGCCTGCATTAGATTGGTTCACCAGAATGAAAATAGCATCTGGTGCTGCGAGAGGACTAGAGTACTTGCACGACAAGGCCAACCCCCCCGTCGTATACAGGGACTTGAAATCGTCCAACATCTTGCTGGATAACGATCTTAATCCAAAACTATCTGATTTTGGACTGGCCAAGCTTTCCGGGGGAGATAAGATGAACCTCATATCTCCTGGAGTTACGGGTACCTATGGTTATTCTGCTCCGGAGTATGTGAGAACTGGTCACCTCTCTTTGAAATCAGATGTGTACGGTTTTGGAGTTGTGTTGCTAGAGCTCATAACTGGACGACGAGCCATTGATACTACGAGACCAAACGAGGAGCAAAACCTAATCTCATGGGCACAACCCCTATTCAGAGATCCCAAAAGGTTTCCGGATATGGCAGATCCGCTTCTTGGTAAACATTTCCCAGAAAAGGATCTGAATCAAGCTGTAGCAATAGCAGCCATGTGCCTGCAGGAGGAAGAAGCAGCCCGTCCTTTGATGAGTGACGTTGTAACTGCTCTGAGCTTCCTTTCCATGGTTCCTCCAGAGGTTATTCCGGCATCTCTCTCACCTGCCACCTCCCCCCCTGAGGAGAGTATTACTAGTGAAAGTGAAGCCGAAACTGCAAGTGACGAAAACGAAGATGGAAATGGTGATTGCGTTTGTTCTAGCAGAAGAAGCGGGAGTGTTTCAAGCTGCAAAAGCAGTGCAAATGGTAATTTAAGCCAGAAGAGCAGCAGTACGAGAGAGAGAGATTTAAAGAAGAGCAGCAGAAAGTCTAGTGTGAGAGTTTTGAGCCAGAAGAATAGCACGGGATGGGAGGATGAGAGTGAGATTAGCGGGAACAGGCTATCCCAAGGAAATATATCGATTGGGCTTATAAGCAGTGGGGAATCCCAGGGAGAAAGTGTTCGGTTAGACCGCCGCAGCAGCAGCAGGAGGTCACAAGAAGGGAGCATACGTTTAGACCATACCAACAGCGCTGGATCAAACAAGCCAAATAATGTGGAGCAGGAGCGTATAAGCACCAAGGATGATTTCACGTGGCATTGA 1539 0.4711 MNCFPCFSSQKSKKSHSKREHGSPQQDNVTSRTPDDGNPVENANFKAQTYTFRELATATKNFRQECLLGEGGFGRVYKGTIPATGQVVAVKQLDRNGMQGNKDFLAEVLALSHLNHENLVNLVGYCADGDQRLLVYEFMSGGSLEDRILDNKSNQPALDWFTRMKIASGAARGLEYLHDKANPPVVYRDLKSSNILLDNDLNPKLSDFGLAKLSGGDKMNLISPGVTGTYGYSAPEYVRTGHLSLKSDVYGFGVVLLELITGRRAIDTTRPNEEQNLISWAQPLFRDPKRFPDMADPLLGKHFPEKDLNQAVAIAAMCLQEEEAARPLMSDVVTALSFLSMVPPEVIPASLSPATSPPEESITSESEAETASDENEDGNGDCVCSSRRSGSVSSCKSSANGNLSQKSSSTRERDLKKSSRKSSVRVLSQKNSTGWEDESEISGNRLSQGNISIGLISSGESQGESVRLDRRSSSRRSQEGSIRLDHTNSAGSNKPNNVEQERISTKDDFTWH 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3878 512 FunFam Serine/threonine-protein kinase PBS1 139 349 - -
Glsi02g3878 512 MobiDBLite consensus disorder prediction 26 43 - -
Glsi02g3878 512 MobiDBLite consensus disorder prediction 349 442 - -
Glsi02g3878 512 MobiDBLite consensus disorder prediction 455 512 - -
Glsi02g3878 512 MobiDBLite consensus disorder prediction 1 43 - -
Glsi02g3878 512 Pfam Protein kinase domain 64 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g3878 512 SUPERFAMILY Protein kinase-like (PK-like) 48 368 IPR011009 -
Glsi02g3878 512 Gene3D Transferase(Phosphotransferase) domain 1 139 342 - -
Glsi02g3878 512 MobiDBLite consensus disorder prediction 483 499 - -
Glsi02g3878 512 MobiDBLite consensus disorder prediction 464 482 - -
Glsi02g3878 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Glsi02g3878 512 ProSitePatterns Protein kinases ATP-binding region signature. 68 91 IPR017441 GO:0005524
Glsi02g3878 512 PANTHER OS07G0668900 PROTEIN 3 342 - -
Glsi02g3878 512 CDD STKc_IRAK 68 336 - -
Glsi02g3878 512 FunFam probable serine/threonine-protein kinase RLCKVII 35 138 - -
Glsi02g3878 512 MobiDBLite consensus disorder prediction 422 442 - -
Glsi02g3878 512 Gene3D Phosphorylase Kinase; domain 1 25 138 - -
Glsi02g3878 512 ProSiteProfiles Protein kinase domain profile. 62 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g3878 512 SMART serkin_6 62 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g3878 512 MobiDBLite consensus disorder prediction 382 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3878 Glsi-ChrGlsi02 85092958 85094850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3878 1 376 Glycoside Hydrolase AT3G07070 61.519 8.95e-167 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Glsi02g3878 Pkinase 4.5e-47 CL0016