Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3877 ATGAATATCATAATAAAAAAGCCCACACATCTCGCTTCCTTATTCTCCATTGCTATATCATCCCTATTCCTATACTGTTTTCCACTGGTTTCTCCAGCCCCCAATGATCAAATACCACCAAGTCAAATCGGTCAATGTGTGCTAAATTTGAGCTCATACCCATATGTGGAATATGGTGAGTGTGGGGTGGTGCAGGAGGACATGAGCCAATGGGATGGGTTCCCAAACACACTGTGCTGCCGTAATGTCCTCACAGTGTTTTCTGAAGCCTTGGCCTTGCAAGCCCGTAACCCAGTGCAGCAGGGTGCTCTGTTTATTTCCCAATATGAATGGCAGATGTGCACCAAAATGTTCCAACCCCATTCATGTGGGCTTGATACCTTGTACTTTGGAAGTACCAATTGCTCTAACATTAAATTGCAGAATATTCAGGGGCAGCAGCCATACCAAGACGCCTTAGACAAATGCGCCCACTTCGATCATCCTTTCCATCAGTCTTGTGCGGATTGCACGAGTGCAGTGTTAGCCGTGAGAGACATTCTATATGAAAAATCTGTGGGAACGGACGTTAATGCTACAGAGAGAGCCGTCTGCGGGGTAGCAGCTCTTGTTTCTCTTGCAGCTGGCGAAACCGCCGACCCTTCCGTCGCCGACAAATTCTTACGTTGTTTCCCCTTTTCAGACAGAAAGCTTTCTTCAGCAAAATTCCTGGTTAATGTGCTATTAGCTGTAATTGCAATAACGTTGATCATAATTCTGGTGAAATATGTGTCGGAGAAGAAATCTCGTAAACCGGTAAGGTTGAAAGAGATCACTACGTGGTCTGGAATGTACAGGTTCTCCAAAGCTGAGATTGAGACTGCCATAAACTACGGCAATGAAAGGAAATGCCTTGGACGCGGGAGTGCCGGCCAGGTTTACAAAGGCGTTCTTCCCAGCGGTCAAGTTGTGGCCATCAAGCATTTAAGCAAGACCAACAGCTCTGATTCTTTCACTCGGGAAGTTGAAGGTCTTTCAAGGCTTCGCCATCCAAATTTGGTTTGTCTCTTTGGGTGTTGCATGGAAGATGGGGAGAGATATTTAGTGTACGAGTACTGTGCAGAAGGGAATCTTGCTCAACATCTCTTACGAAGAGACAGCCTTTTGACATGGGAAACAAGAGTTAATATTTTGAGGGACTGCTCCTTTGCACTCAAGTATCTCCACCATCATATAGAGGGTTGCGTTGTCCACAGAGATATTAAGCTTACCAACATCCTATTGACTGAAACTCTGCAAGCAAAACTGTCGGATTTTGGACTGGCAAGGATGCTGGGGATGGAAGAGAGCAAAGTGTTTACTGATGTGAGAGGAACCATAGGGTATATGGATCCAGAGTACATGAGCAATGCCAAGTTGAGCTGTGCCAGTGACATATACAGTTTTGGTATAGTTGCCTTGCAAATTCTATCAGGGCAGAAAGTGATAGAATTAGATCTTGATGCCAGAGATCAGCTGACTAGGAAGGCAAGAGATGTGAGTATGGGAAAAAGACCAATATTGGACTTTGAAGACCCAAGGCTAAATGGACAAGTGAATAAGGCGGACTTTGAAGCCATCTTGCAGATTGCAGTGCTGTGTGTTGCCAAATCAAGCAAAGGTCGCCCAAGCATTGAGGTTGTGTTTGAGGAGTTTGACAAGGTCTATAAGAACACTCTTGCTGAATGGAAGGCAAAGCAGGATTGCAGCACATCCACCTCCAAATCCTCGGATTTGATTCCTGTTTGA 1767 0.4522 MNIIIKKPTHLASLFSIAISSLFLYCFPLVSPAPNDQIPPSQIGQCVLNLSSYPYVEYGECGVVQEDMSQWDGFPNTLCCRNVLTVFSEALALQARNPVQQGALFISQYEWQMCTKMFQPHSCGLDTLYFGSTNCSNIKLQNIQGQQPYQDALDKCAHFDHPFHQSCADCTSAVLAVRDILYEKSVGTDVNATERAVCGVAALVSLAAGETADPSVADKFLRCFPFSDRKLSSAKFLVNVLLAVIAITLIIILVKYVSEKKSRKPVRLKEITTWSGMYRFSKAEIETAINYGNERKCLGRGSAGQVYKGVLPSGQVVAIKHLSKTNSSDSFTREVEGLSRLRHPNLVCLFGCCMEDGERYLVYEYCAEGNLAQHLLRRDSLLTWETRVNILRDCSFALKYLHHHIEGCVVHRDIKLTNILLTETLQAKLSDFGLARMLGMEESKVFTDVRGTIGYMDPEYMSNAKLSCASDIYSFGIVALQILSGQKVIELDLDARDQLTRKARDVSMGKRPILDFEDPRLNGQVNKADFEAILQIAVLCVAKSSKGRPSIEVVFEEFDKVYKNTLAEWKAKQDCSTSTSKSSDLIPV 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3877 588 Pfam SPARK 42 184 IPR043891 -
Glsi02g3877 588 Gene3D Transferase(Phosphotransferase) domain 1 367 584 - -
Glsi02g3877 588 Gene3D Phosphorylase Kinase; domain 1 263 365 - -
Glsi02g3877 588 SMART serkin_6 292 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g3877 588 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672|GO:0006468
Glsi02g3877 588 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 227 560 - -
Glsi02g3877 588 FunFam probable receptor-like protein kinase At5g59700 366 577 - -
Glsi02g3877 588 FunFam Cysteine-rich receptor-like protein kinase 40 265 365 - -
Glsi02g3877 588 Pfam Protein kinase domain 295 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g3877 588 ProSiteProfiles Protein kinase domain profile. 292 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g3877 588 SUPERFAMILY Protein kinase-like (PK-like) 272 556 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3877 Glsi-ChrGlsi02 85089386 85091748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3877 188 558 Receptor kinase-like Gene Family AT2G19230 33.938 6.44e-56 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Glsi02g3877 Pkinase 1.8e-46 CL0016