Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3872 ATGGCCAACAGAGGGGTCTCAGAAACCGACGCAACTGTGGTTTTAAATGCAAAGGCATTGGATTTGAAGCACAAGTTGCGGGGACTCGTAAATATTATTTTGGACGACGACGATTACCCTCTTGGCACTGTTGACGAGGCTATTGCCGCTCTTTCCGCTCTCAAGAATTTGAAATATAGCAGGCCCCTACCTCAGAAATTGGATGATTTGTCTATTCCTGCCGAATTTCGATGCCCCATTTCAAGAGAGCTAATGAGAGATCCTGTTATCTTGGCCACTGGTCAGACTTATGATCGACCATTTATCCAGAGGTGGTTAAATGAGGGCCACAGAACATGCCCTCAAACACAGCAAGTCCTCTCTCACTCCATCCTAACTCCTAATTACTTGGTCCAAGACATGATTTCACAGTGGTGTAAGGAGAATGGAGTTGAGCTACCAAAGCCTGTTCGGGACAATGAAGAAGTAATAACTGATGCAGACAGAAGCCATTTAAATTCGTTGCTTATTAAGTTGTCAATGTCTATTTCCGATCAGAAAGAAGCCGCAAAAGAACTTCGGCTGTTAACAAAACGAATTCCCTCATTTCGAATCCTTTTTAAGGAGTCAAGTGATGTGATTGTACAGTTGCTCAGTCCATTATCACCTAGCACAGCTGATATCCATCCTGATCTTCATGAGGACTTGGTCACAACTGTTCTAAACCTCTCAATTCACGATGATAATAAGAAAATCTTTGCTGAGAATCCAAGGGTCATCCCTCTGCTAACTGATTCCTTAAAATCTGGAACCATTCAAGCAAGAAGCAATGCTGCTGCAGCTATTTTCACATTATCAGCACTTGATTCCAACAAGAGCATCATTGGAAAATCTGGAGCTATCAAATATTTGATAGACCTTTTAGAAGAGGGACATGCATTAGCCATGAAAGATGCCGCCTCTGCCATATTCAACCTATGTCTTGTGAATGAAAATAAAGGGAAGACTGTCCGAGAAGGGGCAGTCAAGGTTATCCTTAACAAGATCATGGAAGGGGTTCTAGTTGATGAGTTGTTGGCTATCCTGGCACTCCTCTCTAGCCATCCCAAGGGTGTTGAAGAAATGAGTGATCTCAGTGCTGTCCCGTTGTTGCTGCGTATTATAAGGGAGAGCACGTCGGAACGTAGTAAGGAAAATTGTGTTGCTATCCTACATACAATCTGTTTGAACGATAGAACAAAATGGAAGGAAATTAGAGAAGAAGAAAGGGCCAGGGGTACACTGTCTGAACTTGCACAATGTGGGACTTCAAGGGCCAAAAGGAAGGCTAATGGGATTCTTGAGAGGCTCAATAGATCTCCCACCTTAACACACACTGCTTAG 1362 0.4325 MANRGVSETDATVVLNAKALDLKHKLRGLVNIILDDDDYPLGTVDEAIAALSALKNLKYSRPLPQKLDDLSIPAEFRCPISRELMRDPVILATGQTYDRPFIQRWLNEGHRTCPQTQQVLSHSILTPNYLVQDMISQWCKENGVELPKPVRDNEEVITDADRSHLNSLLIKLSMSISDQKEAAKELRLLTKRIPSFRILFKESSDVIVQLLSPLSPSTADIHPDLHEDLVTTVLNLSIHDDNKKIFAENPRVIPLLTDSLKSGTIQARSNAAAAIFTLSALDSNKSIIGKSGAIKYLIDLLEEGHALAMKDAASAIFNLCLVNENKGKTVREGAVKVILNKIMEGVLVDELLAILALLSSHPKGVEEMSDLSAVPLLLRIIRESTSERSKENCVAILHTICLNDRTKWKEIREEERARGTLSELAQCGTSRAKRKANGILERLNRSPTLTHTA 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3872 453 FunFam RING-type E3 ubiquitin transferase 155 448 - -
Glsi02g3872 453 SUPERFAMILY ARM repeat 175 443 IPR016024 -
Glsi02g3872 453 CDD RING-Ubox_PUB 73 125 IPR045210 -
Glsi02g3872 453 ProSiteProfiles U-box domain profile. 71 145 IPR003613 GO:0004842|GO:0016567
Glsi02g3872 453 SMART arm_5 361 402 IPR000225 GO:0005515
Glsi02g3872 453 SMART arm_5 281 321 IPR000225 GO:0005515
Glsi02g3872 453 SMART arm_5 239 280 IPR000225 GO:0005515
Glsi02g3872 453 PANTHER U BOX DOMAIN-CONTAINING 40 443 - -
Glsi02g3872 453 Gene3D - 200 348 IPR011989 -
Glsi02g3872 453 Pfam U-box domain 72 142 IPR003613 GO:0004842|GO:0016567
Glsi02g3872 453 SMART Ubox_2 75 138 IPR003613 GO:0004842|GO:0016567
Glsi02g3872 453 Gene3D - 349 448 IPR011989 -
Glsi02g3872 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 145 IPR013083 -
Glsi02g3872 453 SUPERFAMILY RING/U-box 68 149 - -
Glsi02g3872 453 FunFam RING-type E3 ubiquitin transferase 71 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3872 Glsi-ChrGlsi02 85055515 85057688 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3872 134 453 U-box Gene Family AT3G07360 59.146 7.11e-126 366