Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3856 ATGGCAATAGCATTGGCTCCTCTGTTATTGTTTTCTTGTCTCATCGTCTCTGTTTACGCCGTTGATGTTGAATATGTACAGTGCAATTGTGATGAAGATGGGCTTTGGAGCATACAAAGCCTTCTCGAGTGCCAAAAAGTCAGTGATTTTTTCATTGCTATAGCTTATTTTTCGATCCCAATTGAACTCCTTTATTTCGTTAGCTTCTCCAACATTCCATTCAAATGGGTCTTCCTTCAATTCATTGCATTCATAGTTCTCTGTGGCTTGACCCATTTACTCAATGGATGGACTTATTACGGACCTCACTCGTTCCAGTTGGTGCTCTCCCTTACTATTGCGAAATTCCTTACAGCTCTTGTCTCATGTGCAACTGCAATAACCCTTCTGACTCTGATTCCGCTTCTCCTCAAAATCAAAGTAAGAGAGCTTTTCTTGAGGCAGAATGTGTTGGAATTAGACCAAGAGGTTGGAATGATGAAAAAACAAAAGGAAGCAAGCTGGCATGTTCGGATGCTCACCCGAGAAATTAGAAAGTCTCTGGATAAGCATACAATCTTGGACACCACTCTTGTAGAGCTTTCTAAGGCATTGGACTTGCATAATTGTGCTGTCTGGATGCCAAACAAGGACGTACAAGAAATGTACCTAACTCATGAGTTGAAAACAAGCTCTACTAAGAATGTTCACAAATCTATTCCTATGAATGATCCTGATGTCCTAGAGGTGAGAAAAGATAAGGGGGTGAGAATTTTGAGGCCTGAGTCCGCCCTAGGTGCTGCAAGTAGTGGTGGATCTAGAGAGTCGGGTGCTGTTGCAGCTATTCGCATGCCAATACTTCATGTTTCCAATTTCAAAGGGGGGACACCAGAGTTCATTGAGACATCATATGCTATACTGGTTTTGGTTCTTCCAAATTCGAACTCTAGGGTTTGGAGCTACCATGAGATGGAGATAGTTGAAGTAGTTGCTGATCAGGTGGCTGTAGCCCTGTCTCATGCATCCGTCCTTGAAGAGTCTCAGTTAATGAGACAGAAACTGGCAGAGCAAAATCGAGCATTGCAACAGGCTCAAAAGAATGCAATGATGGCAAGTCAGGCAAGGAACTCATTTCAGAAAGTGATGAGTCATGGAATGCGGAGGCCTATGCATTCAATCCTAGGTTTGCTTTCAATATTTCAAGAGGATAATATGAGATCTGAACAGAAGCTGATACTCGACACTATGGTGAAAACTAGCAACGTTCTCTCAAGTTTGATTAATGATGTAATGGAGATTTCAGCAAATGACAAAGGAAGCTTCCGGTTAGAGATGAGACCTTTCCATCTACATTCCACGATGAGGGAAGCTGCCTGCGTTGCCAAATGTTTGTGTGTATATAAATGCTTTGGTCTTGAGATTGATGTCCAGAAGTCTTTACCTGATCAGGTGATAGGCGATGGGGCAAGAACTTTTCAAGTAATTCTACATATGATGGGTTATATGTTGAACATATACCAGGGAGGAGGGACTCTTGTTTTTCGAGTTTCTGTTGAAAGTGATCATGGGGATAGGGATGATAAAATTTTGGGAATATGGAGACCAAGCATGCAAAATGAGTATGTATATATAAAATTTGATTTTCATATAATTGGTACAAGTTCTCAGTCTGAGGAATCAATTCCATCAAGACATTATGCTGGTCTGAGGCACTACAATAATGAACCTAAGGAGGGCCCGAGCTTCAGCATGTGCAAAACACTGGTGCAGATGATGCAAGGTGACATCTGGATATCACAAAACTCTAGCATGGCGCTTGTTCTCAAGTTTCAGATAGGACCATCATTTGGAAGATTCAATTTTGCACCTAAAGATTCTTTAAACTCACAGTTTAGAGGCCTTAAGGTTATGTTAGCTGATGATGATGGTGTAAACAGGACAGTGACCAAGAAGCTACTCGAGAAGATTGGTTGTCAAGTAACTGATGTTTCATCGGGGTTTGAGTGCCTGGGTGCTATTAGCGCCTCAGGTAACTCCTTCAAAATTATCCTTCTGGATCTTCATATGCCTGAAATGGATGGTTTTGAAGTGGCAATTAGGATCCGGAAGTTCCACAGCCGTAGCTGGCCCTTGATCATAGCTCTTGCAGCTAGTGTAGAAGAACATGTGAAGGAGAGATGCTTACAGGCGGGAATGAATGGAGTAATTCGGAAACCTATTCTTCTTCATGATATAGCAGATGAACTTAGAAGAGTACTGCAACGTGCAGGTGAAAAACCGTGA 2262 0.4191 MAIALAPLLLFSCLIVSVYAVDVEYVQCNCDEDGLWSIQSLLECQKVSDFFIAIAYFSIPIELLYFVSFSNIPFKWVFLQFIAFIVLCGLTHLLNGWTYYGPHSFQLVLSLTIAKFLTALVSCATAITLLTLIPLLLKIKVRELFLRQNVLELDQEVGMMKKQKEASWHVRMLTREIRKSLDKHTILDTTLVELSKALDLHNCAVWMPNKDVQEMYLTHELKTSSTKNVHKSIPMNDPDVLEVRKDKGVRILRPESALGAASSGGSRESGAVAAIRMPILHVSNFKGGTPEFIETSYAILVLVLPNSNSRVWSYHEMEIVEVVADQVAVALSHASVLEESQLMRQKLAEQNRALQQAQKNAMMASQARNSFQKVMSHGMRRPMHSILGLLSIFQEDNMRSEQKLILDTMVKTSNVLSSLINDVMEISANDKGSFRLEMRPFHLHSTMREAACVAKCLCVYKCFGLEIDVQKSLPDQVIGDGARTFQVILHMMGYMLNIYQGGGTLVFRVSVESDHGDRDDKILGIWRPSMQNEYVYIKFDFHIIGTSSQSEESIPSRHYAGLRHYNNEPKEGPSFSMCKTLVQMMQGDIWISQNSSMALVLKFQIGPSFGRFNFAPKDSLNSQFRGLKVMLADDDGVNRTVTKKLLEKIGCQVTDVSSGFECLGAISASGNSFKIILLDLHMPEMDGFEVAIRIRKFHSRSWPLIIALAASVEEHVKERCLQAGMNGVIRKPILLHDIADELRRVLQRAGEKP 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3856 753 PIRSF Ethylen_sen_hybr_HK 1 752 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Glsi02g3856 753 ProSiteProfiles Histidine kinase domain profile. 374 609 IPR005467 -
Glsi02g3856 753 ProSiteProfiles Response regulatory domain profile. 628 746 IPR001789 GO:0000160
Glsi02g3856 753 SMART REC_2 627 742 IPR001789 GO:0000160
Glsi02g3856 753 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 24 749 - -
Glsi02g3856 753 FunFam Ethylene receptor 625 749 - -
Glsi02g3856 753 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 352 432 IPR036097 GO:0000155|GO:0007165
Glsi02g3856 753 Gene3D - 627 752 - -
Glsi02g3856 753 Pfam His Kinase A (phospho-acceptor) domain 368 431 IPR003661 GO:0000155|GO:0007165
Glsi02g3856 753 SMART HisKA_10 367 432 IPR003661 GO:0000155|GO:0007165
Glsi02g3856 753 SUPERFAMILY GAF domain-like 185 334 - -
Glsi02g3856 753 Pfam Response regulator receiver domain 629 740 IPR001789 GO:0000160
Glsi02g3856 753 Gene3D - 431 605 IPR036890 -
Glsi02g3856 753 FunFam Ethylene receptor 4 334 428 - -
Glsi02g3856 753 SUPERFAMILY CheY-like 623 748 IPR011006 -
Glsi02g3856 753 CDD HisKA 365 427 IPR003661 GO:0000155|GO:0007165
Glsi02g3856 753 SMART gaf_1 182 341 IPR003018 GO:0005515
Glsi02g3856 753 Gene3D - 333 430 - -
Glsi02g3856 753 CDD REC_ETR-like 627 742 - -
Glsi02g3856 753 Gene3D - 160 332 IPR029016 -
Glsi02g3856 753 Pfam GAF domain 184 331 IPR003018 GO:0005515
Glsi02g3856 753 Coils Coil 337 367 - -
Glsi02g3856 753 CDD HATPase_ETR2_ERS2-EIN4-like 473 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3856 Glsi-ChrGlsi02 84903302 84905965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3856 22 751 Miscellaneous Gene Families AT3G04580 62.918 0.0 925
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi02g3856 GAF 9.5e-12 CL0161