Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3852 ATGCTAAGCAAAAGCGTACGAGTATACTGTATCGCGTTACTAACATGCGAGTTCAATTTGTTAAATGACTGTATTCATATGCCATTTAGCCGGAACCCTCATCGCTCATTCAACATTGCACTCGTCTGGCCAAGACTCCTAGTGATCATCAAGATGTCAAATCCAAAAGTGTTCTTTGACATTCTAATTGGAAAAATGAAAGCTGGTCGAATAGTAATGGAGCTATTTTCCGATGTCACCCCAAAGACGGCTGAAAACTTCCGAGCTCTCTGCACTGGTGAAAACGGGATTGGAATATCTGGGAAACCGCTACACTATAAAGGATCAAGATTTCATCGGATTATTCCAGAGTTCATGTGTCAGGGAGGAGATTTTACAAAGGGAAATGGAACTGGAGGAGAGTCAATCTATGGCTCGAAATTTACTGACGAGAATTTCAAGCTGAAGCATACAGGGCCTGGTATTCTCTCAATGGCAAATGCTGGACCCAATACAAATGGTTCTCAGTTCTTTATATGTACTACCAGGACATCATGGCTTGATGGAAAACATGTTGTATTCGGAAAAGTTGTTGATGGTTACGGTGTAGTTAAGGAGATGGAGAAAGTGGGTTCAGAGAATGGGAGCACATCAGAACCAGTTGTAATTGAAGATTGTGGTCAGATAGCAGACAATTGA 678 0.4159 MLSKSVRVYCIALLTCEFNLLNDCIHMPFSRNPHRSFNIALVWPRLLVIIKMSNPKVFFDILIGKMKAGRIVMELFSDVTPKTAENFRALCTGENGIGISGKPLHYKGSRFHRIIPEFMCQGGDFTKGNGTGGESIYGSKFTDENFKLKHTGPGILSMANAGPNTNGSQFFICTTRTSWLDGKHVVFGKVVDGYGVVKEMEKVGSENGSTSEPVVIEDCGQIADN 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3852 225 SUPERFAMILY Cyclophilin-like 47 222 IPR029000 -
Glsi02g3852 225 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 106 123 IPR020892 GO:0003755|GO:0006457
Glsi02g3852 225 Gene3D - 49 225 IPR029000 -
Glsi02g3852 225 FunFam Peptidyl-prolyl cis-trans isomerase 51 223 - -
Glsi02g3852 225 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 58 221 IPR002130 GO:0000413|GO:0003755
Glsi02g3852 225 CDD cyclophilin_ABH_like 55 220 - -
Glsi02g3852 225 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 56 222 - -
Glsi02g3852 225 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 65 220 IPR002130 GO:0000413|GO:0003755
Glsi02g3852 225 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 154 169 IPR002130 GO:0000413|GO:0003755
Glsi02g3852 225 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 169 181 IPR002130 GO:0000413|GO:0003755
Glsi02g3852 225 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 75 90 IPR002130 GO:0000413|GO:0003755
Glsi02g3852 225 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 182 197 IPR002130 GO:0000413|GO:0003755
Glsi02g3852 225 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 111 123 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3852 Glsi-ChrGlsi02 84890263 84892704 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3852 69 203 U-box Gene Family AT5G67530 49.265 1.95e-30 116