Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3849 ATGGATGATGAGAATCCACCTCTTCCCTTCAACGAAAATGACTCCCAAGAAATGCTTCTTTACCAAGTGCTGGCACAGGCACAGGCAGAGGCTGAGGCAGATTCCTGTAAAGCTGACCCAGAATGCTCTAATATTAATATAGAACAAGTTTGCTACAGAGGAGTGCGAAGGAGGCCATGGGGGAAGTATGCGGCGGAGATAAGAGACTCTACGAGGAATGGGGTGAGAGTTTGGTTGGGAACCTTTGACACTGCTGAGGCTGCTGCTTTGGCTTACGACCAAGCGGCCTTAACAATGCGAGGTTCAATGGCTGTTCTCAATTTCCCCCCTCACCTCGTTCGCCAATCCCTTCAAAACATGCCCTATGCCTTCCACAAATGTAGCTCTCCTGTTTTGGAATTGAAGAAGAGGCACTCCATCAGGAGAAAATTGGAGAGCAAGAAGATGAAAATGAAGCAACAACATCAGGTGCTTGTTTTGGAGGATTTAGGGGTTGACTACTTGGAACAGCTTCTTACTTTGTCCCCGGATGCTTAA 537 0.4749 MDDENPPLPFNENDSQEMLLYQVLAQAQAEAEADSCKADPECSNINIEQVCYRGVRRRPWGKYAAEIRDSTRNGVRVWLGTFDTAEAAALAYDQAALTMRGSMAVLNFPPHLVRQSLQNMPYAFHKCSSPVLELKKRHSIRRKLESKKMKMKQQHQVLVLEDLGVDYLEQLLTLSPDA 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3849 178 ProSiteProfiles AP2/ERF domain profile. 51 109 IPR001471 GO:0003700|GO:0006355
Glsi02g3849 178 PANTHER DNA-BINDING DOMAIN 28 172 IPR044808 GO:0003700|GO:0009873
Glsi02g3849 178 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Glsi02g3849 178 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Glsi02g3849 178 CDD AP2 52 111 IPR001471 GO:0003700|GO:0006355
Glsi02g3849 178 Gene3D AP2/ERF domain 51 110 IPR036955 GO:0003700|GO:0006355
Glsi02g3849 178 SUPERFAMILY DNA-binding domain 51 110 IPR016177 GO:0003677
Glsi02g3849 178 FunFam Ethylene-responsive transcription factor 2 50 111 - -
Glsi02g3849 178 SMART rav1_2 51 115 IPR001471 GO:0003700|GO:0006355
Glsi02g3849 178 Pfam AP2 domain 51 101 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3849 Glsi-ChrGlsi02 84880044 84880580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3849 8 178 AP2-EREBP Transcription Factor Family AT3G23240 51.111 6.95e-61 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi02g3849 AP2 7.2e-16 CL0081