Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3848 ATGTTGATAGACGTGGACAGCAATAGGATATCAAGCTTCAAGTCGTGGGACGCATGCGCCATTTGGCATTGCCATTTAAAAGACTGTCTGGAGCAAACGACACCCTTCAGCGCCCAAAACGACTCTAACCTCCAACTTAAACTTCTCAGTTCCACCAAGGCATGTTATTCGCTCACTCCCCCTTCTCTTCCTCTTCGTCTTCGTCTTCGTCTTCTTCCCATTTTCGGCTTTTGCCCTCCATCCAATAAGCATCTGGCTTTCGGTTTGTTTCGAGGCGAAGGAATGGAACAATCAGTTCTTGATGACATAATCAATCGTCTTCTTGAAGTTCGCGGCCGTCCAGGAAAGCAGGTTCAGCTATCGGAATCCGAGATCCGTCAGCTTTGTGTTGTTTCGAGAGAGATTTTACTGCAACAGCCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGTGGTGACGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGTGGATTACCTCCTCATGCCAATTATTTATTTTTGGGGGATTATGTGGACCGAGGGAAGCAGAGTTTGGAAACAATATGCCTTCTCCTTGCTTATAAAATAAAATATCCTGAGAACTTTTTTCTCTTGAGGGGGAACCATGAATGTGCTTCTATAAACCGTATATATGGATTTTATGATGAGTGTAAGAGAAGGTTCAATATAAGGTTATGGAAGACATTTACTGACTGCTTCAACTGCCTACCTGTGGCAGCCCTTATTGATGAAAAGATTCTGTGTATGCATGGGGGACTTTCCCCTGACTTGCTGAGTTTGGATCAGATTAGAAATCTACAGCGGCCCACTGATGTACCAGATACTGGTTTGCTTTGTGATCTCCTTTGGTCAGATCCAAGCAAAGATGTTCAAGGTTGGGGATTGAATGACAGGGGAGTTTCATTTACTTTTGGTGCTGATAAGGTCTCAGAGTTTCTTCAGAAGCATGATCTGGATCTGATTTGTCGTGCTCATCAGGTTGTAGAGGATGGGTATGAGTTCTTTGCTAATCGACAGCTTGTAACAATATTTTCAGCACCGAATTATTGTGGAGAGTTTGACAATGCTGGCGCAATGATGAGTGTTGATGAGACACTAATGTGCTCTTTCCAGATATTAAAACCAGCGGAGAAAAAACCGAAGCTCAATTTTGGAAGTACAACAACTGCTAAACCTGGGAACTCTCCAGCAGGTGTAAAGTCCTTCCTGGGTGCAAAAGTATGA 1263 0.4307 MLIDVDSNRISSFKSWDACAIWHCHLKDCLEQTTPFSAQNDSNLQLKLLSSTKACYSLTPPSLPLRLRLRLLPIFGFCPPSNKHLAFGLFRGEGMEQSVLDDIINRLLEVRGRPGKQVQLSESEIRQLCVVSREILLQQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGLPPHANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNIRLWKTFTDCFNCLPVAALIDEKILCMHGGLSPDLLSLDQIRNLQRPTDVPDTGLLCDLLWSDPSKDVQGWGLNDRGVSFTFGADKVSEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKKPKLNFGSTTTAKPGNSPAGVKSFLGAKV 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3848 420 Pfam Serine-threonine protein phosphatase N-terminal domain 100 146 IPR031675 -
Glsi02g3848 420 Gene3D - 93 399 IPR029052 -
Glsi02g3848 420 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 99 392 - -
Glsi02g3848 420 FunFam Serine/threonine-protein phosphatase 93 397 - -
Glsi02g3848 420 Pfam Calcineurin-like phosphoesterase 148 340 IPR004843 GO:0016787
Glsi02g3848 420 SMART pp2a_7 120 390 IPR006186 GO:0016787
Glsi02g3848 420 ProSitePatterns Serine/threonine specific protein phosphatases signature. 211 216 IPR006186 GO:0016787
Glsi02g3848 420 PRINTS Serine/threonine phosphatase family signature 273 300 IPR006186 GO:0016787
Glsi02g3848 420 PRINTS Serine/threonine phosphatase family signature 330 350 IPR006186 GO:0016787
Glsi02g3848 420 PRINTS Serine/threonine phosphatase family signature 210 234 IPR006186 GO:0016787
Glsi02g3848 420 PRINTS Serine/threonine phosphatase family signature 177 204 IPR006186 GO:0016787
Glsi02g3848 420 PRINTS Serine/threonine phosphatase family signature 148 175 IPR006186 GO:0016787
Glsi02g3848 420 PRINTS Serine/threonine phosphatase family signature 244 270 IPR006186 GO:0016787
Glsi02g3848 420 PRINTS Serine/threonine phosphatase family signature 352 368 IPR006186 GO:0016787
Glsi02g3848 420 SUPERFAMILY Metallo-dependent phosphatases 111 392 IPR029052 -
Glsi02g3848 420 CDD MPP_PP1_PPKL 99 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3848 Glsi-ChrGlsi02 84873674 84879285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3848 127 333 Calmodulin-binding Proteins AT5G63870 31.048 9.48e-28 110