LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi02g3847	ATGTGCGAAGCCCTTAAGAAGCACTACCAATTGTGCGACGAGATCGGCCGTGGACGCTTCGGCACCATCTTCCGCTGCATTCACCCCAATTCCAACCATTTCTATGCCTGCAAAGTCATCGACAAGCGCCTTCTCGCCGATTCCACAGACCGCGGTTGCCTCGAAAATGAACCCAAATACATGACTCTTTTATCTCCACACCCCAATATCCTTCAAATCTTTCATGTCTTCGACGACGACGATTTCCTATCCATTGTGCTCGAGCTCTGCCAACCCCTTACCCTCTTCGACCGCATCATCAATCGCCCCTTGCCGGAGACCCAAGCAGCTTCTATCATGAAGCAACTCCTTGAAGCGCTTGCGCATTGCCACCGACTTGGCGTAGCTCACAGGGACATCAAGCCAGACAATCTTTTGTTTGATTCCAGGAATAATCTTAAACTAGCCGACTTTGGGTCGGCAGAGTGGTTCGGCGATGGAAGAAGCATGAGTGGGGTGGTGGGTACGCCGTATTATGTAGCGCCGGAGGTTTTACTGGGAATAGAATACAATGAGAAAGTAGATGTATGGAGTAGCGGAGTGATTTTGTACATAATGTTGGGTGGGATTCCACCGTTTTATGGAGAATCGGCAGCTGAGGTTTTTGAGGCTGTGGTGAGGGCCAATCTGAGGCTTCCCTCTAGGATTTTCAGGTCAGTGTCGCCCGGTGCTAAGGATCTGCTGAGGAAGATGATTTGTAGGGATGCGTCGAGGCGATTATCGGCAGAGCAAGCCTTGAGGCATCCGTGGATTCTGAGCGGAGGAGAGACGACTGATCTGACTTGATTATTGAGCCAAATGGTCAAAGGGAAGGCCTATCGCTCGACTGCAGAGGACAGACCCTTCTATAGCGACGCCGACTTGTCCTATTTGTTGCATCAGATAAAAGCTACAGTAACTGAATTACTTTGA	951	0.5005	MCEALKKHYQLCDEIGRGRFGTIFRCIHPNSNHFYACKVIDKRLLADSTDRGCLENEPKYMTLLSPHPNILQIFHVFDDDDFLSIVLELCQPLTLFDRIINRPLPETQAASIMKQLLEALAHCHRLGVAHRDIKPDNLLFDSRNNLKLADFGSAEWFGDGRSMSGVVGTPYYVAPEVLLGIEYNEKVDVWSSGVILYIMLGGIPPFYGESAAEVFEAVVRANLRLPSRIFRSVSPGAKDLLRKMICRDASRRLSAEQALRHPWILSGGETTDLTXLLSQMVKGKAYRSTAEDRPFYSDADLSYLLHQIKATVTELL	316

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi02g3847	316	PANTHER	SERINE/THREONINE-PROTEIN KINASE	6	271	-	-
	Glsi02g3847	316	CDD	STKc_CAMK	8	263	-	-
	Glsi02g3847	316	SMART	serkin_6	9	264	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi02g3847	316	SUPERFAMILY	Protein kinase-like (PK-like)	7	282	IPR011009	-
	Glsi02g3847	316	Gene3D	Transferase(Phosphotransferase) domain 1	94	298	-	-
	Glsi02g3847	316	FunFam	Phosphoenolpyruvate carboxylase kinase 2	1	275	-	-
	Glsi02g3847	316	Pfam	Protein kinase domain	9	264	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi02g3847	316	FunFam	Phosphoenolpyruvate carboxylase kinase 1	1	91	-	-
	Glsi02g3847	316	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	128	140	IPR008271	GO:0004672\|GO:0006468
	Glsi02g3847	316	ProSiteProfiles	Protein kinase domain profile.	9	264	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi02g3847	316	ProSitePatterns	Protein kinases ATP-binding region signature.	15	38	IPR017441	GO:0005524
	Glsi02g3847	316	Gene3D	Phosphorylase Kinase; domain 1	1	91	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi02g3847	Glsi-ChrGlsi02	84868860	84870375	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi02g3847	3	285	EF-hand Containing Proteins	AT1G50700	38.276	1.30e-71	227

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Glsi02g3847		Pkinase	3.7e-69	CL0016