Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3843 ATGGGGACGGAACTCATGAAAATATGTGTTCAAGAAGATAACGATGAGTTTCCATCAGTTCCACCAGGCTTTGAGACATATACGTCTTTCTTACTGAATAGGGTAGGACACAATGAGAAACAAAATGATAAAAACATGACCAGTTGTTCAGCCTCTACAAGTGCTGGTGCTTCTGAATCACAGTCAATTCAGGCAGAAACTGAGGTTCAAATTAGTGATACTGCAAATGTTTCTAGGTCCCTTCGACGAAGACGGTGGATTAACCATGGATGGTGCTATAACAGCTCAGAGGAAGACCCTGATTCTGAGCAGCTTGATCAAAATTTCTCCTCAAGACCTTGTATACCTAGGGGAGTCATCCGCGGATGTCCAGATTGCAGTAATTGCCAAAAGGTTGTTGCCAGATGGAGACCAGAACATGCTTGCAGGCCAAACATTGAGGATGCTCCTGTCTTTTACCCAACTGAAGAGGAGTTTCAAGATACTTTGAAATATATTGCAAGTATTCGTTCCAGAGCAGAACCATATGGAATCTGTCGCATTGTTCCCCCTTCTTCTTGGAAACCACCCTGTCCTCTCAAGGAAAAAAATATATGGGAAGGTTCTAAATTTGCTACTCGTGTCCAGAGGATTGATAAACTTCAGAATCGTGATTCAGTGAGAAAGATGTCAAGGATTTATAGTAATTCTAAGAGGAAAAGGAGAAGATGCACAAGAATGGGGGTGGATAATGGAACTAGTAGAGGACTTAATGCAGGATTTTGTGAGATTGAAAGATTTGGGTTTGAACCTGGTCCAGAATTTACTTTGGAAACATTTCAGAGATATGCGGATGATTTTAAAGCCAAATACTTCAGAAAGAATGAGATTATATCTCATTTGGGAGGTAATACTGCAATGTTAAAAGACACCTGGGACCCTTCTGTGGAGAACATTGAGGGCGAATATTGGCGGATGGTAGAGAAACCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATCTGGAAACTGGGGTTTTTGGGAGTGGTTTTCCTAGAAAGCTCAGTGAAGTTGGTTCCAGTTTACTTGAAGAGTACATAAAATGTGGCTGGAATTTAAATAACTTTGCTAGGCTTCCTGGATCTATGCTCTCTTATGAAAGCAGTGATATATCTGGTGTTCTAGTGCCCTGGTTGTATGTAGGAATGTGCTTTTCTTCCTTTTGCTGGCATGTGGAAGATCACCATTTATATTCATTGAATTACATGCATTGGGGTGCTCCAAAAATATGGTATGGCGTCCCTGGAAAAGATGCTTGCAAATTGGAAGAAACCATGAGAAAGCATTTACCAGACCTTTTTAAAGAACAACCTGACTTGCTTCATAAGCTGGTCACGCAGCTTTCTCCTTCTATCCTTAAGTCTGAAGGAGTACCTGTCTATAGGTGTGTCCAGAACCCTGGACAGTTTGTTCTGACATTCCCTAGAGCATATCACTCTGGGTTCAACTGTGGCTTCAACTGTGCAGAGGCAGTTAATGTAGCTCCAGTTGACTGGCTGCCCCATGGTCAGATTGCTATAGAGCTATACCAGAAGCAGGGACGCAAGACTTCTATATCCCATGACAAACTTTTGCTTGGGGCTGCTAGGGAAGCAGTGCAAGCGCAGTGGGAGCTTAATTTGCTGAAGAAGAATACCTCAGATAATCTACGATGGAAAGATGTCTGTGGAAAGGATGGCCTTCTAGCTAAAGCACTCAAAACACGTGTTGAGATGGAACAAGCAAGGATGCAGTTGCTCTACAGTTCTTCGCAGGCATTGAAAATGGAGGGCAGTTTTGATGCCACAAGCGAAAGGGAATGCAATATTTGCCTTTTTGATTTACACCTCTCTGCAGCTGGTTGCCGTTGTTCCCCAGATGGATATGCTTGCTTGGATCATGCAAAGCAGTTCTGTTCATGTGCTTGGGATTCCAAATTCTTCCTCTTTCGTTATGATATTAGTGAATTATATATTCTTCTCGAGGCATTGGAAGGAAAATTAAGTGCAGTATACAGATGGGCAAAATTAGACCTTGGGCTGGCACTAACTTCTTATATATCAAAAGACGATGTCCAATTTAGTAACTTACTTCTGTCTTCAAAGGAAACAATACTTCAGGAATTGAGATTAGATTCCTTAAACTTGTCTCGTTCTTCTTGTGGCACTGTGCATAAAGAGATGGCCTTGCATCCATCAGCTGTTCCTATTGAAGATTCTCGTTTGATAGATGTCCCAATAGAGAATCTGGTGAATTCAGCAAAAAGCATTGATCAGAGCTATATACAACCTAGAAAATCAACAGAAGATGTGTCTTCCTTGGGTCATTTGAAGGAACTGTTTACACCTAATAAATCGACATCTGCATGTGAGATGGCTAATCATGAGACATGTTCCAATAAAGAATCTGTTATTTGCAGATCAAACGTGCAAACCCATGTTTGTGAGTTGTCTCAAGGGGACACATCACTTTCTTTACCTCTGTCTCTAGCTGAACATGGACCTAAGAAAACTTCACGTTGTGGACATGACAATGTTATAGTTCTTAGTGATGATGAGACTGATGAACTAAAGAGGACAGATCCAGATAAAGGGAAGGAACTTTCTCAAAAGCTTAAAGGTTCTGGTGATAAAGCAAAACCACATGATGATAGAGAAGATCGGGACTTGACTATCCCTCTGACAGATACTGCTGTGATGGTTGAGAAGGATATGAGTTCTCATTCAACTTATGACTTGCATGTAAAACAGAAAAACTGTGTAATCAAGGGACCAGTTCCAGGTTCTACTGCAATAGATTTTTCTTGTAATATAGGCTTTAGTATAGCAGGACCAGTCAGACACATTCAGGCTTCCTCAACAGGAGATACTAGAGATCATTGTCTGGAAACTTTGGAGAGTTGTTCAGAGAATCAACAGTATTCTTGCACTGTCAAACCTAAGAACAAGGACAACCATGGGAAGATTGGAGGATGTGGTACTTCTAAAATAGCAGACAATGCAAGAGCTGTTAATGGAAACCTGTCTTGCAGTCTAAACAATTTGGAAAGGTATTACTGTCAGAAAGGTCCTCGTATTGCAAAGGTTGTCCGGCGTATCAACTGCAATGTTGAACTTCTAGAATTTGGTGCTGTGCTTTCTGGAAAGTCATGGTGCAACAGTCAGGCTATATTTCCCAAGGGATTTAGAAGCCGTGTTAGATACACGAATGTCTTAGATCCAACCAGTATGTGTTATTATATTTCAGAAATTCTTGATGCTGGACGTGATGAACCTCTATTTATGGTGTCCTTGGAACATTATCCAAGTGAGGTCTTCATTCATATTTCAGCTGTAAGATGCTGGGAACTGGTAAGAGAGAGAGTGAATCAAGAGATCACAAAGCAACATAAGCTGGGAAGAAAGGACCTTCCTCCTCTACAGCCTCCTGGCAGCCTCGATGGCTTTGAAATGTTTGGGTTTTCTTCACCAGTGATAGTGCAGGCTATTGAGGCATTGGATCAAAGTCGAACCTGTAATGAATATTGGGATTCCCGACCATACTCCCGGCCTCGAGGGCAGATTTCACAAGCTTTTCAACCCAATGAAAAAGGTGGGAACGTGGATAGGCTATCTGAGGGGAGAAATGGTCAAGAGGACCTCAGGAATCAGCTCATGCCTGTTGGAGTTGATGCAATACTAAGGAGCCTATTTAAAAGGGCCAACGCACTAGAATTGAACTCATTATGTAGGATTCTCGGTGATAAAAGGCCAGCGGCTGACGTCAACCTAATTGCTCAACTTCTCAATGAGGAGATTCACAACCGTCCTAAATGA 3834 0.4176 MGTELMKICVQEDNDEFPSVPPGFETYTSFLLNRVGHNEKQNDKNMTSCSASTSAGASESQSIQAETEVQISDTANVSRSLRRRRWINHGWCYNSSEEDPDSEQLDQNFSSRPCIPRGVIRGCPDCSNCQKVVARWRPEHACRPNIEDAPVFYPTEEEFQDTLKYIASIRSRAEPYGICRIVPPSSWKPPCPLKEKNIWEGSKFATRVQRIDKLQNRDSVRKMSRIYSNSKRKRRRCTRMGVDNGTSRGLNAGFCEIERFGFEPGPEFTLETFQRYADDFKAKYFRKNEIISHLGGNTAMLKDTWDPSVENIEGEYWRMVEKPTEEIEVLYGADLETGVFGSGFPRKLSEVGSSLLEEYIKCGWNLNNFARLPGSMLSYESSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYMHWGAPKIWYGVPGKDACKLEETMRKHLPDLFKEQPDLLHKLVTQLSPSILKSEGVPVYRCVQNPGQFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYQKQGRKTSISHDKLLLGAAREAVQAQWELNLLKKNTSDNLRWKDVCGKDGLLAKALKTRVEMEQARMQLLYSSSQALKMEGSFDATSERECNICLFDLHLSAAGCRCSPDGYACLDHAKQFCSCAWDSKFFLFRYDISELYILLEALEGKLSAVYRWAKLDLGLALTSYISKDDVQFSNLLLSSKETILQELRLDSLNLSRSSCGTVHKEMALHPSAVPIEDSRLIDVPIENLVNSAKSIDQSYIQPRKSTEDVSSLGHLKELFTPNKSTSACEMANHETCSNKESVICRSNVQTHVCELSQGDTSLSLPLSLAEHGPKKTSRCGHDNVIVLSDDETDELKRTDPDKGKELSQKLKGSGDKAKPHDDREDRDLTIPLTDTAVMVEKDMSSHSTYDLHVKQKNCVIKGPVPGSTAIDFSCNIGFSIAGPVRHIQASSTGDTRDHCLETLESCSENQQYSCTVKPKNKDNHGKIGGCGTSKIADNARAVNGNLSCSLNNLERYYCQKGPRIAKVVRRINCNVELLEFGAVLSGKSWCNSQAIFPKGFRSRVRYTNVLDPTSMCYYISEILDAGRDEPLFMVSLEHYPSEVFIHISAVRCWELVRERVNQEITKQHKLGRKDLPPLQPPGSLDGFEMFGFSSPVIVQAIEALDQSRTCNEYWDSRPYSRPRGQISQAFQPNEKGGNVDRLSEGRNGQEDLRNQLMPVGVDAILRSLFKRANALELNSLCRILGDKRPAADVNLIAQLLNEEIHNRPK 1277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3843 1277 ProSiteProfiles FYR domain FYRC motif profile. 1095 1185 IPR003889 GO:0005634
Glsi02g3843 1277 SMART fyrc_3 1099 1193 IPR003889 GO:0005634
Glsi02g3843 1277 MobiDBLite consensus disorder prediction 858 894 - -
Glsi02g3843 1277 Gene3D Cupin 134 508 - -
Glsi02g3843 1277 Gene3D - 1039 1179 - -
Glsi02g3843 1277 MobiDBLite consensus disorder prediction 1195 1218 - -
Glsi02g3843 1277 SUPERFAMILY Clavaminate synthase-like 314 551 - -
Glsi02g3843 1277 MobiDBLite consensus disorder prediction 41 69 - -
Glsi02g3843 1277 Pfam JmjC domain, hydroxylase 391 507 IPR003347 -
Glsi02g3843 1277 Pfam jmjN domain 150 183 IPR003349 -
Glsi02g3843 1277 ProSiteProfiles JmjN domain profile. 149 190 IPR003349 -
Glsi02g3843 1277 Pfam C5HC2 zinc finger 614 664 IPR004198 -
Glsi02g3843 1277 PANTHER LYSINE-SPECIFIC DEMETHYLASE 142 1173 - -
Glsi02g3843 1277 SMART JmjN_1 148 189 IPR003349 -
Glsi02g3843 1277 Pfam F/Y rich C-terminus 1097 1181 IPR003889 GO:0005634
Glsi02g3843 1277 ProSiteProfiles FYR domain FYRN motif profile. 1035 1093 IPR003888 GO:0005634
Glsi02g3843 1277 ProSiteProfiles JmjC domain profile. 361 524 IPR003347 -
Glsi02g3843 1277 SMART cupin_9 358 524 IPR003347 -
Glsi02g3843 1277 FunFam Putative lysine-specific demethylase JMJ16 1041 1179 - -
Glsi02g3843 1277 Pfam F/Y-rich N-terminus 1043 1090 IPR003888 GO:0005634
Glsi02g3843 1277 SMART fyrn_3 1049 1093 IPR003888 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3843 Glsi-ChrGlsi02 84838415 84846161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3843 1 1275 JUMONJI Transcription Factor Family AT1G08620 53.687 0.0 1251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Glsi02g3843 JmjC 2.4e-46 CL0029