Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3840 ATGATAAAGGGTGGTGTTTGGAAAAACACCGAGGATGAAATCCTGAAAGCGGCTGTTATGAAATATGGCAAAAACCAGTGGGCTCGAATCTCTTCGCTATTGGTTCGCAAATCCGCCAAACAATGTAAGGCTCGCTGGTATGAGTGGCTTGATCCTTCCATTAAAAAGACCGAGTGGACAAGAGAAGAGGATGAGAAACTACTTCATCTTGCTAAGCTTATGCCCACACAGTGGAGAACAATTGCTCCAATTGTAGGCCGTACCCCTTCCCAGTGCCTCGAGAGGTATGAGAAACTCCTTGATGCAGCCTGTGTAAAGGATGAGAACTATGAACCTGGTGATGACCCCAGGAAATTGCGTCCTGGGGAGATTGACCCAAACCCCGAGTCAAAACCTGCACGACCAGATCCTGTTGATATGGATGAAGATGAGAAGGAAATGCTATCTGAAGCACGAGCTCGGTTAGCCAACACTAAGGGCAAGAAGGCAAAAAGGAAAGCCAGGGAGAAACAGCTTGAGGAAGCAAGGAGGCTTGCTTCTTTACAGAAAAAGAGAGAGCTGAAGGCTGCTGGAATTGATATCAGGCAGCGGAGGAGGAAAAGGAAAGGAATAGACTATAATGCCGAAATTCCGTTCGAGAAAAGGCCTCCTCCAGGGTTTTTTGATGTTACTGATGAAGATAGACCAGTGGAACAGCCCAAGTTTCCTACTACAATTGAAGAACTTGAGGGAAAAAGAAGGGCTGACATGGAAGCACAGTTAAGGAAGCAAGACATTGCAAAGAATAAAATTGCACAAAGGCAAGATGCCCCATTTGCTATACTGCATGCGAACAAGTTGAATGACCCAGAAACAGTTAGAAAGAGATCAAAATTGATGCTTCCGGCGCCCCAGATTTCTGACCATGAGTTGGAAGAAATTGCAAAGATGGGTTATGCCAGTGACCTTGCAGTGAGCGAGGAACTTACAGAAGGTAGTGGTGCAACACATGCTCTTCTGGCTAACTATGCACAGACACCTAGCCAGGGAATGACTCCTTTACGTACACCTCAGAGAACACCAGCTGGTAGAGATGCTATCTTGATGGAAGCTGAAAATCTGGCCAGGTTGAGAGAGTCTCAGACACCATTGTTAGGAGGAGATAACCCAGACTTGCATCCTTCAGATTTTTCTGGGGTCACTCCTAAGAAAAAGGAGATTCAGACTCCAAATCCAATGCTCACTCCCTCTGCAACCCCTGGGGGTGCAGGTCTTACTCCTCGAAGTGGTATGACACCAGTAAGGGATGGCTTTTCTTTTGGCTTGACTCCGAAGGGAACTCCTTTGAGGGACGAGCTTCATATTAATGAGGGCTTGGATATGCAAGAGAGTACAAAGCTTGAGCTACGGAGACAAGCTGATCTGAGAAGAAGTTTGCGCTCTGGTCTAGGCAGTCTTCCACAGCCCAAAAATGAATACCAGATAGTTATGCAACCAGTTCCAGAAGATGCTGAAGAACCTGAGGAGAAGGTTGAAGAGGATATGTCTGATAGAATAGCTAGAGAAAAGGCCGAAGAAGAAGCACGGCAGCAGGCGTTACTAAGAAAACGATCAAAAGTCCTCCAAAGGGAACTTCCTAGGCCTCCTGCTGCATCATTAGAATTAATAAGAAATTCCTTGATGAGAGCTGATGGGGACAAGAGTTCCTTTGTTCCACCTACCTCTATTGAGCAAGCTGATGAGATGATAAGAAAGGAGCTTTTAAGCTTACTGGAGCATGACAATGTTAAGTATCCACTTGATGAGAAGGTTAATAAGGAGAAAAAGAAAGGAGCCAAGCGCTCAGCAAATGGTATTGCTGCTGTTCCTGTCATAGAAGATTTTGAGGAAGATGAAATGAAAGATGCTGACCAGTTGATAAAGGAAGAAGCCCATTATATTCGAGTAGTAATGGGGCATGAAAGTGAACCTCTTGATGAATTTGTTGAAGCACACAGAACTTGCCTTAATGATCTCATGTACTTTCCCACTCGTAATGCCTATGGTCTCTCTAGTGTTGCTGGAAACATGGAGAAGCTTGCAGCTTTGCAGAATGAATTTGAGAACGTGAGAAACAAGCTGGATGATGGCAAGGAGAAAGTAGTACGCCTTGAGAAGAAGGTGATAGTGCTCACACAAGGCTATGAGATGCGGGCAAAACAAGGTCTCTGGCCACAAATTGAGGCCACCTTCAAACAGATGGACACTGCTGCAACAGAACTTGAGTGCTTCCAAGCTTTGCAAAAGCAGGAGCAATTAGCAGCATCACACAGGATAAACAATCTGTGGGCTGAAGTACAGAAGCAAAAGGAACTCGAGAAAACTCTGCAAAGGAGGTATGGGGATCTTCAGGCAGAGCTGGAAAGGATACAGAATGTCATGGACCAATGCAGGATACAAGCACAAAAGCAGGAAGAAATTGCAGCAAAGAATCATGCTATTGAGTTTGCTGAGACTGTAGCTAATGAAACTAACGTGCATGGCACAGAGAATTGTAAAGCTGCACCGCCCTCAAATGAGCATGGAAGTTCTACGTTAGTTGGCTCGTCTAATGATGAAACTGCTGACCAGCAAGTAGACATTGTGCAAGACCAGGGCACATCAAGCCCCAAAGTCGACATGGATGTGGATGCTGATAAAGAGCAAATGACTCTCAACACCGATGTTAAATTACCGGATGCTGCACCTACTACGGAGGGGGGCACATCAAGCCCCAAAGTCGACATGGTTGTGGATGCTGATAAAGAGCAAATGACTCTCAACGCTGATGTTAAATTACCGGATGCTGCACCTACTGCGGAGGGGGACAGTGCAACAGGGGTAAAAGGTAACAGCAGTGATAATTATATTGCCAACAGAGAGACTGCTGTAGACATGGGATCTGCAGAGGAGATTGGAACTATCAAGGAAAATAGGGAGGTTCAAGATGTTGGGAATCCAGAAAACTTTGTGGAAGCCATGAATTCACACGATAACAGCATACTGGAAACCACTGCTTTCAATGAGGGGGATAAGATGCAAGTTGCTGATGGCAAGGGAGAGCCTTCCACTGAAGGTGATGTAGTTGAGCCAACCCGCGTTGAAGTACGAAAAGATGCTGGAGAGTCTGTTGTCCTTCGACTCTGCCGGAAGCAAGCAGAGGTGGGGATCAGAATTGGGTTACTTGCAAATTGCAATTTTGTTGGAGTTTCTGATATTTTACTGAATTCCAGTTTCATTCTGATCGCGCAAAAGGATATAGTTTTTGTGACAGAGAAGACGACCTTAATCATTTCAAGGAGACCCCCTCCCCTCTTTCCAAGGAGTTTAGAGGTTTCCTAGAAAATGGTAGCTAGAATAGTGGATTTTCGGTCAGACACGGTGACAAAGCCAAGTGAAGCAATGCGAGCTGCTATGGCAAGTGCTGATGTTGATGATGATGTACTAGGCTACGACCCAACTGCTCTACGCTTAGAAACCGAGATGGCAAAGATAATGGGCAAGGAAGCAGCTCTTTTTGTTCCATCAGGCACTATGGGAAACCTTGTAAGTGTGCTTGTCCATTGTGATATTCGGGGAAGTGAAATTATTCTCGGAGACATTTCCCATATCCATATTTATGAGAATGGAGGCATTGCAACTATTGGAGGGGTACATCACAGGACAGTGAAAAATAATGAGGATGGAACCATGGACATTGATTTGATTGAGGCTGCCATCAGAGATCCAAAAGGGGAGCTTGTGTATCCAACCACGAGGCTAATCTGCTTGGAAAATACTCATGCAAACTCTGGTGGGAGATGCCTTTCTGTTGAATATACAGACAGAGTTGGAGAGTTAGCTAAGAGGCATGGACTGAAGCTTCACATTGACGGAGCTCGTATTTTCAATGCATCGGTTGCACTTGGTGTTCCTGTGGACAGGCTTGTCCGAGCAGCTGATTCAGTTTCGGTTTGCCTCTCAAAAGGGCTGGGTGCTCCAGTTGGATCTGTTATTGTTGGCTCCAATAGCTTTATCACAAAGGCTAGGAGGCTCCGAAAAACCTTAGGTGGTGGAATGAGACAGGTTGGCATCCTTTGCGCTGCTGCGCTTGTTGCTTTACAGGAAAATGTGGGAAAGCTGGAAAGTGATCACAAGAAAGCTAGACTTTTGGCTGATAGACTGAATGAAATTAAAGGACTTAAAGTGGATGTCTGTTCAGTGGAGACCAATATTATATATATTGAAATTGAAGAGGGCTTAAGAACTACAGCAGAAAAGCTATGGAAGGACTTGGAAGAACGTGGTATCCTTCTTTTTCCGGAAAGCTCAAGATTAAGAATTGTGTTCCACCACCAAATATCAGAAAGTGATGTGCAGTACGCCTTGTCATGCTTTCAGCAAGCTGTAAAGGGAGTGCACAATGAAAATGGCAACTAG 4416 0.4513 MIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRQRRRKRKGIDYNAEIPFEKRPPPGFFDVTDEDRPVEQPKFPTTIEELEGKRRADMEAQLRKQDIAKNKIAQRQDAPFAILHANKLNDPETVRKRSKLMLPAPQISDHELEEIAKMGYASDLAVSEELTEGSGATHALLANYAQTPSQGMTPLRTPQRTPAGRDAILMEAENLARLRESQTPLLGGDNPDLHPSDFSGVTPKKKEIQTPNPMLTPSATPGGAGLTPRSGMTPVRDGFSFGLTPKGTPLRDELHINEGLDMQESTKLELRRQADLRRSLRSGLGSLPQPKNEYQIVMQPVPEDAEEPEEKVEEDMSDRIAREKAEEEARQQALLRKRSKVLQRELPRPPAASLELIRNSLMRADGDKSSFVPPTSIEQADEMIRKELLSLLEHDNVKYPLDEKVNKEKKKGAKRSANGIAAVPVIEDFEEDEMKDADQLIKEEAHYIRVVMGHESEPLDEFVEAHRTCLNDLMYFPTRNAYGLSSVAGNMEKLAALQNEFENVRNKLDDGKEKVVRLEKKVIVLTQGYEMRAKQGLWPQIEATFKQMDTAATELECFQALQKQEQLAASHRINNLWAEVQKQKELEKTLQRRYGDLQAELERIQNVMDQCRIQAQKQEEIAAKNHAIEFAETVANETNVHGTENCKAAPPSNEHGSSTLVGSSNDETADQQVDIVQDQGTSSPKVDMDVDADKEQMTLNTDVKLPDAAPTTEGGTSSPKVDMVVDADKEQMTLNADVKLPDAAPTAEGDSATGVKGNSSDNYIANRETAVDMGSAEEIGTIKENREVQDVGNPENFVEAMNSHDNSILETTAFNEGDKMQVADGKGEPSTEGDVVEPTRVEVRKDAGESVVLRLCRKQAEVGIRIGLLANCNFVGVSDILLNSSFILIAQKDIVFVTEKTTLIISRRPPPLFPRSLEVSXKMVARIVDFRSDTVTKPSEAMRAAMASADVDDDVLGYDPTALRLETEMAKIMGKEAALFVPSGTMGNLVSVLVHCDIRGSEIILGDISHIHIYENGGIATIGGVHHRTVKNNEDGTMDIDLIEAAIRDPKGELVYPTTRLICLENTHANSGGRCLSVEYTDRVGELAKRHGLKLHIDGARIFNASVALGVPVDRLVRAADSVSVCLSKGLGAPVGSVIVGSNSFITKARRLRKTLGGGMRQVGILCAAALVALQENVGKLESDHKKARLLADRLNEIKGLKVDVCSVETNIIYIEIEEGLRTTAEKLWKDLEERGILLFPESSRLRIVFHHQISESDVQYALSCFQQAVKGVHNENGN 1471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3840 1471 Coils Coil 679 713 - -
Glsi02g3840 1471 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Glsi02g3840 1471 MobiDBLite consensus disorder prediction 210 231 - -
Glsi02g3840 1471 Gene3D - 57 111 - -
Glsi02g3840 1471 MobiDBLite consensus disorder prediction 395 409 - -
Glsi02g3840 1471 Gene3D Aspartate Aminotransferase, domain 1 1369 1463 IPR015422 GO:0003824
Glsi02g3840 1471 Pfam Beta-eliminating lyase 1121 1408 IPR001597 GO:0006520|GO:0016829
Glsi02g3840 1471 SUPERFAMILY PLP-dependent transferases 1120 1464 IPR015424 -
Glsi02g3840 1471 Gene3D - 1119 1368 IPR015421 GO:0003824
Glsi02g3840 1471 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Glsi02g3840 1471 CDD TA_like 1121 1456 - -
Glsi02g3840 1471 FunFam probable low-specificity L-threonine aldolase 1 1119 1368 - -
Glsi02g3840 1471 Pfam pre-mRNA splicing factor component 402 651 IPR021786 -
Glsi02g3840 1471 MobiDBLite consensus disorder prediction 833 912 - -
Glsi02g3840 1471 Pfam Myb-like DNA-binding domain 7 67 - -
Glsi02g3840 1471 MobiDBLite consensus disorder prediction 373 438 - -
Glsi02g3840 1471 MobiDBLite consensus disorder prediction 110 157 - -
Glsi02g3840 1471 SMART sant 55 102 IPR001005 -
Glsi02g3840 1471 SMART sant 3 52 IPR001005 -
Glsi02g3840 1471 MobiDBLite consensus disorder prediction 110 177 - -
Glsi02g3840 1471 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 800 IPR047242 GO:0000398|GO:0000974
Glsi02g3840 1471 FunFam CDC5 cell division cycle 5-like 57 117 - -
Glsi02g3840 1471 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 104 IPR017930 -
Glsi02g3840 1471 ProSiteProfiles Myb-like domain profile. 51 100 IPR001005 -
Glsi02g3840 1471 CDD SANT_CDC5_II 52 103 IPR047240 -
Glsi02g3840 1471 Gene3D - 2 56 - -
Glsi02g3840 1471 MobiDBLite consensus disorder prediction 833 876 - -
Glsi02g3840 1471 CDD SANT 7 50 IPR001005 -
Glsi02g3840 1471 FunFam CDC5 cell division cycle 5-like 2 56 - -
Glsi02g3840 1471 NCBIfam GntG family PLP-dependent aldolase 1116 1459 IPR023603 -
Glsi02g3840 1471 Coils Coil 164 184 - -
Glsi02g3840 1471 SUPERFAMILY Homeodomain-like 30 103 IPR009057 -
Glsi02g3840 1471 MobiDBLite consensus disorder prediction 933 953 - -
Glsi02g3840 1471 FunFam Low-specificity L-threonine aldolase 1369 1464 - -
Glsi02g3840 1471 Coils Coil 772 813 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3840 Glsi-ChrGlsi02 84817626 84828718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3840 1 829 MYB-Related Transcription Factor Family AT1G09770 75.841 0.0 1222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi02g3840 Beta_elim_lyase 1.1e-92 CL0061