Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3838 ATGGAAAGGGGCGGCAGAACAGCAAGACATGAATATAAGTCCATTTTGGCCGAGGCGCATACTACTTTTGACCTCTGGACCAAAAATATGATTACTCTAGCCTTTACAGGAGCCTTGGATTTCGAGAGAAGCAACCCAGAAGGTGAGATTGAGCGTCCAAAACACTGAGGAGCAAAACCCATTGTTAAGTGTGTGCCCTCAAAGAGCTTGAGCAAGCTGGAAATTGTTAGAGAGGGTGGAGTGACGATGGTGAGGACTCCTTGTTGTGAGAAGATGGGATTGAAGAAGGGTCCATGGACTCCTGAAGAAGATCAGATTTTGATTTCTTACATTCAACGATATGGCCATGGAAACTGGCGGGCGCTTCCAAAACAAGCCGGTTTGTTAAGGTGCGGAAAGAGTTGTAGGCTTCGTTGGATAAATTACTTGAGGCCAGATATTAAACGAGGGAAATTCAGCAAGGAAGAAGAAGAGACAATCCTCAAGCTACATCAAATTCTTGGAAATAGATGGTCTGCTATTGCGGCGAGATTACCGGGACGAACTGATAATGAAATAAAGAATTTTTGGCACACCCACTTGAAGAAGAGGCTTGAAAGAAGTGAAGTTCTAATTCATAATGGGAAAGCATCTTCATATAACCGGCAAGAGGAACAAGCATCTTCAAGTTCAGGGGCTGCGATGGCTATGTCGAGACAGGTCGTAGGGAATGCATCAAGTGCCGCCTCTGTTTTCACTGGGAAAGTCTCGAATGCTGATGATGTTTTAGCCTCGACGAGTTATCCCGGATTTCACAGTGCAGTCTTTTCTGATACATCAGGGGAAACCATGGGCACTCACAGCTCCAATAAGATCAGCGACGAAATGGAATTTTGGTACAATCTATTCATGAAAGCAGGGCAACCATCACAAGGGCATGGGAATTTAGGACAGATTGCTTGA 942 0.449 MERGGRTARHEYKSILAEAHTTFDLWTKNMITLAFTGALDFERSNPEGEIERPKHXGAKPIVKCVPSKSLSKLEIVREGGVTMVRTPCCEKMGLKKGPWTPEEDQILISYIQRYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEETILKLHQILGNRWSAIAARLPGRTDNEIKNFWHTHLKKRLERSEVLIHNGKASSYNRQEEQASSSSGAAMAMSRQVVGNASSAASVFTGKVSNADDVLASTSYPGFHSAVFSDTSGETMGTHSSNKISDEMEFWYNLFMKAGQPSQGHGNLGQIA 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3838 313 SMART sant 95 145 IPR001005 -
Glsi02g3838 313 SMART sant 148 196 IPR001005 -
Glsi02g3838 313 FunFam MYB transcription factor 151 198 - -
Glsi02g3838 313 FunFam MYB-related transcription factor 95 148 - -
Glsi02g3838 313 ProSiteProfiles Myb-like domain profile. 144 194 IPR001005 -
Glsi02g3838 313 CDD SANT 98 143 IPR001005 -
Glsi02g3838 313 CDD SANT 151 194 IPR001005 -
Glsi02g3838 313 Gene3D - 95 148 - -
Glsi02g3838 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 143 IPR017930 -
Glsi02g3838 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 144 198 IPR017930 -
Glsi02g3838 313 Pfam Myb-like DNA-binding domain 96 143 IPR001005 -
Glsi02g3838 313 Pfam Myb-like DNA-binding domain 149 194 IPR001005 -
Glsi02g3838 313 ProSiteProfiles Myb-like domain profile. 91 143 IPR001005 -
Glsi02g3838 313 SUPERFAMILY Homeodomain-like 92 190 IPR009057 -
Glsi02g3838 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 83 253 - -
Glsi02g3838 313 Gene3D - 151 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3838 Glsi-ChrGlsi02 84806602 84808006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3838 83 296 MYB Transcription Factor Family AT2G31180 48.750 1.05e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi02g3838 Myb_DNA-binding 2.5e-15 CL0123