Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3830 ATGCTCAGGCAGCAGTGGCGGTGCTTCTTTCCAACTCTCCACATAAACCTAAACGTGCAGAAGGCAGTATCAATAGTTCATCCCTACCGGCTTCTTTTTGAGCAATTAAGGACCATGTCATACGTAGATGCTGTGTCTATTTTGTCTTCCTCTTCGGGCTCCCTCAAGTTAGTCTCTTGTATTAGGTTTCCTCTTCATGTAACTTTGCTAAAGATGGAGGGAAAAATTGAGGAAGTGGAAGATATCGGGAGTGCTTCTAGTGGTTCTTTTATTGACAATTCAGATAATGGGTCTTCAACATCGGAATTGGATGACAGAGTGCATCTTGAGGAACCTTTGACTGAGGAAGAAGTAGAAGACTTGATTGCTGAGTTGTTAGAAGTTGAGAGTAAGGCTGCAGAGGCCCAAGAAGCTCTTGAAGAAGAGTCTCTTGCCAAAGTGGAGACTGAGGTTAGGCGAGAGTTGGAGCAAACTCTTCAAGGGGATGATTTGGAAACTGCTGTTGTGGATGAGATGACTACTTTAAAAGAAGAGTGGGAAGCTGTTCTGGATGACCTTGAGACTGAAAGTGCCTACTTGCTGGAGCAACTTGATATGGCTGGCATTGAGCTCCCAAGCCTTTATAAGTGGATTGAGAAAGAAGCTCCTAATGGTTGTTGTACTGAAGCTTGGAAAAAGAGGAATCATTGGATAGGGTCTCAGGTAACTGCTGAGTTTTCTGAGTCAGTTGGTGATGCTGAGAAGTATCTACAAGTTCACAGACCTGTTAGAAGGCGGCATGGTAAATTATTGGAAGAGGGTGCCAGTGGGTTTCTCCAGAAAAAACTTTTAGATGAAACCAGTGAGCCTGGAAAGGAAGAAACAGAGGTAGATTGGGGAGAGTTCAATAAAATATTTCATGATGGGGGTGATGCTGATGCTTCATTTGGCAGCAAGAATTGGGCTTCTGTTTATTTGGCCAGCACTCCACAGCAAGCTGCACTGATGGGACTTGAATTTCCTGGTGTCAATGAGGTGGAGGAGATTGATGATGTTGATGGCAATTCTACCGATCCATTTATTGCAGCTGCCATTGAAAACGAAAAAGAACTAGAACTTTCTGATGAACAGAAGAGAAAATTTAAAAAGGTCAACGAAGAAGAAGATGTGATTGTTGATCGAAAGCTTCAAATTCGTTTGAAACGAAGGAGGTATCAAAAGAAAAAACAGATTAACCTTGTTATGAAGGAAGGAACTTGTGATGATGGGGAATTTGTGTCTGAGATCATGGATATTGACAAAGAGAAGCCTTTGAATATTGGCCCTTTGTCAGAGCTCTCTGAATCTTCGATGCCTGATGTTAATGAACACAGAGGTACCAAGCGACAAAACGATGGTGAAGCAGATACTGATATTGAAAAGTGTCGGACTGTTACTATTGACAGTGATGATGAAGCTGATGCAGTTGAAAATAAGTTAGGTTGGAATATGAATACATTAGAGGATCAATCCAAGATAAGCATTGCTGGTTGTCTTCCTTCAGAGCATGTGGAAGAGAAATTTTGCTGCACTACTTGTGATAAAGTGGCTGTTGAAGTTCGCTCTCACCCTCTTTTAAAAGTAATTATTTGTGGGGATTGCTATTCCTTAATGAAGGAAAAGATGCATGTGAAGGTTCTGAATCCTGATTGTTCGGAGTGTTACTGTGCATGGTGCGGAGGAAGCAGTGAGTTAGTCAGCTGTAAATTGTGCAAAATGTTATTCTGCAACAATTGTATAAAGAAGAATCTTGGTGCAGACTTCCTTTCTGAAGTTCAGGCCACTGGCTGGCATTGTTGTTGCTGCCGCCCAAATATTTTGCAAAGACTGTCATCACAACTAGAGAAAGCTATGGGATCTGCTGATATATTAGTTTCCAGCTCTGGTAGTGATTCAGATAGTTCACATGCAGAGATTAATGTTGCTATCAGTTCTAAGCGAAAGCACAAGAAGAAGATTCGGAGGATCCTTGATGATGCTGAATTAGGAGAAGAAACCAAAAGGAAAATTGCAATAGAAAAGGAACGTCAGGAACGTTTGGAGTCTTTGCGAGTACAGTTTTCTGCCTCATCTACTGTCATGAGCTCTGCTAGCTGTAATGGGAATTTATCTGAAGGTGCAAGTATTGAAGTCCTTGGGGATGCGCTAACAGGTTATGTAGTGAATGTTGTGAGGGAAAAAGGTGAAGAAGCTGTCAGAATTCCTCCTAGTATCTCAGCTAAACTGAAAGCCCATCAGATTACGGGAATCAGATTTATGTGGGAGAATATAATACAGTCAATCAGAAAGGTGAAGTCTGGGGATAAAGGTCTTGGTTGTATTCTGGCTCATACAATGGGCCTTGGTAAAACCTTTCAGGTGATAGCGTTCTTGTACACAGCAATGAGAAGTATTGATCTGGGGTTAAGAACTGTACTTATAGTCACACCTGTCAATGTGTTGCACAATTGGCGGCAGGAGTTTATCAAGTGGAAACCTTCTGAATTAAAGCCGCTCAAGGTCTTCATGCTGGAAGAAGTACCAAGGGATAGGAGAGCAGAACTGCTTGCGAAGTGGAGAGCTAAAGGTGGTGTCTTTCTAATTGGCTATACTGCTTTTCGAAATTTGTCTTTTGGAAAGCATGTGAAAGATCGGCACGTGGCAAGAGAAATTTGTCATGCCTTGCAGGATGGACCAGACATACTTGTTTGTGATGAAGCCCATATGATAAAGAATATAAAGGCTGACATAACCCAAGCCTTGAAACAAGTAAAATGCCATAGAAGAATTGCACTGACTGGATCACCCCTTCAGAATAATCTCATGGAGTATTATTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTAGGAACCGCTTCCAAAATCCTATAGAGAATGGTCAACATACTAATTCAACTCTGGATGATGTAAAGATTATGAACCAAAGGTCTCATATCCTGTATGAACAGTTAAAAGGCTTTGTTCAAAGAATGGACATGAATGTAGTGAAGAAGGATTTGCCACCAAAAACTGTCTTTGTGATAACTGTCAAGCTTTCTCCCCTACAGAGAAAACTGTACAAGAGATTCCTCGATGTGCATGGATTCACTAATAGCGGGGCTCCTAATGAAAAGATGAGAAAGAGAAGTTTTTTTGCAGGGTACCAGGCATTAGCTCAGATTTGGAACCACCCTGGGATCTTGCAATTAACTAAAGAAGACAAGGAATATGTAAAGCAAGAAGATGCTGTTGAGAATTTTCTTGTGGATGACAGCTCCAGTGATGAAAATTCTGACTGCAATGTGCTCGTTGGAGAGAAGATGAGATGTGCAAATGAGTTTCTGCAAGGGAAAGATGATAATGGCTTTTTTCTAAAGGGTTGGTGGAATGGTCTTCTGCATGAAAATAATTATAAAGAACTCAATTACAGTGGCAAAATGGTTTTGCTGCTAGACATAGTAACCATGAGTTCTGATGTGGGCGACAAGGTTTTGGTTTTTAGCCAGAGCATACCAACACTTGACCTCATAGAACTTTATCTATCAAGGTTACCCCGACGAGGGAGACGTGGTAAATTTTGGAAGAAAGGAAAAGATTGGTATAGGCTGGATGGAAGGACAGAGAGCTCTGAAAGGCAGAAGCTTGTTGAGAGATTTAATGAGCCTTTGAATAAGAGAGTGAAGTGCACTCTTATTTCGACCAGAGCTGGTTCTTTGGGTATTAATCTTCATGCAGCTAATCGTGTTGTTATAGTTGACGGTTCTTGGAATCCAACATATGATCTCCAGGCTATTTATCGAGCGTGGAGGTATGGCCAGACGAAGCCTGTGTTTGCTTACCGATTGCTGGCTCATGGAACTATGGAAGAGAAAATATATAAGCGCCAGGTAACCAAGGAGGGGCTTGCTGCGAGAGTGGTTGATAGACAGCAAGTGTATAGGACAATATCTAAAGAAGAGATGTTACACCTATTTGACTTTGGTGATGATGAGAACCCTGAGACTTTGGCTGAACTTAACTTAGAGAATGGACATACATGTGAGTCAAATCACCTGTTTCCAGTCGGCCATTCACTGAAACATACAGTGCCACATTCAAATGGAACCAGCTCTGATAAGTTAATGGAAAGCTTAATTAGCAAGCATTATCCGAAGTGGATTGCCAATTATCATGAACATGAAACCTTATTACAAGAGAATGAAGAAGAAAAGCTATCGAAAGAGGAGCAAGACATGGCTTGGGAAGTATACCGGAAAACGTTAGAATGGGAGGAAGTGCAGAGAGTACCACTTGGTGAGTCTCTGCCTGATCAAAAACCACAAATGCCAAATGCAGCAATACCAGTATCAGAGACCCGCAGCCTCTCGCCAACTAAGTTGAGGAATCGTTTTGTGACACGGAAATGTACCAACCTTTCGCACTTGCTGACACTTAGAAGTCAGGGCACTAAATTTGGTTGCAGTACAGTCTGTGGGGAATGCGCCCAAGAGATTAAGTGGGAAGACCTGAAGAACAGAGATGGAAAAGTAGCAAGGTGA 4554 0.4172 MLRQQWRCFFPTLHINLNVQKAVSIVHPYRLLFEQLRTMSYVDAVSILSSSSGSLKLVSCIRFPLHVTLLKMEGKIEEVEDIGSASSGSFIDNSDNGSSTSELDDRVHLEEPLTEEEVEDLIAELLEVESKAAEAQEALEEESLAKVETEVRRELEQTLQGDDLETAVVDEMTTLKEEWEAVLDDLETESAYLLEQLDMAGIELPSLYKWIEKEAPNGCCTEAWKKRNHWIGSQVTAEFSESVGDAEKYLQVHRPVRRRHGKLLEEGASGFLQKKLLDETSEPGKEETEVDWGEFNKIFHDGGDADASFGSKNWASVYLASTPQQAALMGLEFPGVNEVEEIDDVDGNSTDPFIAAAIENEKELELSDEQKRKFKKVNEEEDVIVDRKLQIRLKRRRYQKKKQINLVMKEGTCDDGEFVSEIMDIDKEKPLNIGPLSELSESSMPDVNEHRGTKRQNDGEADTDIEKCRTVTIDSDDEADAVENKLGWNMNTLEDQSKISIAGCLPSEHVEEKFCCTTCDKVAVEVRSHPLLKVIICGDCYSLMKEKMHVKVLNPDCSECYCAWCGGSSELVSCKLCKMLFCNNCIKKNLGADFLSEVQATGWHCCCCRPNILQRLSSQLEKAMGSADILVSSSGSDSDSSHAEINVAISSKRKHKKKIRRILDDAELGEETKRKIAIEKERQERLESLRVQFSASSTVMSSASCNGNLSEGASIEVLGDALTGYVVNVVREKGEEAVRIPPSISAKLKAHQITGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSIDLGLRTVLIVTPVNVLHNWRQEFIKWKPSELKPLKVFMLEEVPRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRHVAREICHALQDGPDILVCDEAHMIKNIKADITQALKQVKCHRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTNSGAPNEKMRKRSFFAGYQALAQIWNHPGILQLTKEDKEYVKQEDAVENFLVDDSSSDENSDCNVLVGEKMRCANEFLQGKDDNGFFLKGWWNGLLHENNYKELNYSGKMVLLLDIVTMSSDVGDKVLVFSQSIPTLDLIELYLSRLPRRGRRGKFWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISKEEMLHLFDFGDDENPETLAELNLENGHTCESNHLFPVGHSLKHTVPHSNGTSSDKLMESLISKHYPKWIANYHEHETLLQENEEEKLSKEEQDMAWEVYRKTLEWEEVQRVPLGESLPDQKPQMPNAAIPVSETRSLSPTKLRNRFVTRKCTNLSHLLTLRSQGTKFGCSTVCGECAQEIKWEDLKNRDGKVAR 1517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3830 1517 Coils Coil 169 196 - -
Glsi02g3830 1517 Gene3D - 722 1002 IPR038718 -
Glsi02g3830 1517 MobiDBLite consensus disorder prediction 432 461 - -
Glsi02g3830 1517 CDD ADDz_ATRX 512 610 - -
Glsi02g3830 1517 MobiDBLite consensus disorder prediction 444 461 - -
Glsi02g3830 1517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1008 1345 IPR027417 -
Glsi02g3830 1517 Pfam Helicase conserved C-terminal domain 1155 1277 IPR001650 -
Glsi02g3830 1517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 734 1002 IPR027417 -
Glsi02g3830 1517 Pfam SNF2-related domain 770 1072 IPR000330 GO:0005524|GO:0140658
Glsi02g3830 1517 PANTHER RAD54-LIKE 98 1511 IPR044574 GO:0016887
Glsi02g3830 1517 Gene3D - 1013 1354 IPR027417 -
Glsi02g3830 1517 SMART ultradead3 744 965 IPR014001 -
Glsi02g3830 1517 CDD SF2_C_SNF 1145 1288 - -
Glsi02g3830 1517 ProSiteProfiles ADD domain profile. 504 636 IPR025766 -
Glsi02g3830 1517 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1157 1325 IPR001650 -
Glsi02g3830 1517 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 770 953 IPR014001 -
Glsi02g3830 1517 Coils Coil 118 145 - -
Glsi02g3830 1517 SMART helicmild6 1180 1277 IPR001650 -
Glsi02g3830 1517 Coils Coil 1395 1415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3830 Glsi-ChrGlsi02 84731158 84775621 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3830 778 1330 RAD5 or RAD16-like Gene Family AT5G43530 25.552 2.45e-31 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Glsi02g3830 SNF2_N 7.9e-51 CL0023