Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3827 ATGCATACCCACTTGCTGTTCTTCTATTTTTACATTGGCCTCTCTCTTGTTTTTGCTGAGGTAGCTCAAGGTGCAGCAAGTGATGAATTCTCAACTTTGCTCCTAGTCAAATCCAGTCTTACTGATCCAATGAAACATCTCAAGGACTGGCAAGCACCCAGCAATGTGACCCACAATGGTTCGCGCCATTGTAACTGGACTGGGGTTTGGTGCAACTCTAAAGGCTTCGTAGAGAGACTTGACCTCTCCAACATGAACCTTAGCGGTCGTGTCTCAGACCACATTCAAGCCCTTTCAAGTCTGTCTTCTCTTGACGTAAGTTGTAATAATTTTGCTTCGTCTTTGCCAAAATCACTTTCCAACCTCTCCTCCCTCAAGAGCTTTGATGTCAGCCAGAACTACTTCACTGGTAGCTTTCCAACCGGTCTTGGAAGAGCCGCAGGATTGAGATCAATTAACGCCTCAAGTAATGATTTTCTGGGTTTTCTTCCTGAGGATCTTGGAAATGCAACATTGCTCGAAAGCCTTGATTTTCGAGGGAGCTACTTCGAAGGTTCAATCCCGAGGAGTTTCAAGAATTTGCAGAAGCTCGCATTTCTTGGGCTTTCAGGCAATAATTTTACAGGCAAGATTCCAGGAGAGCTTGGAGAACTTGCTTCTCTAGAGACATTGATTCTCGGGTACAATGAGTTTGAAGGTGAGATCCCTGCAGAGTTTGGCAACCTTACCAACCTTCGGTACCTCGACTTGGCTGTAGGTAGTCTAAGTGCACAGATTCCACCAGAATTGGGTAGGATGAAAAAACTTACTACAATTTACTTGTACAAGAACAAATTCCAAGGGAAGATTCCCCCTGAAATTGGCAACATTTCGTCACTGGTATTTTTGGACCTGTCTGACAATCAGATTTCAGGGGAGCTTCCAGAGGAACTTGCTAATCTAAAGAACTTGCAGCTCTTGAATGTAATGAGCAATAAACTAACTGGTTTTGTGCCGGAGAAGCTTGGTGAATTGAAAAATTTACAGGTGCTTGAGCTATGGAAAAATTCTTTAAGAGGTCCTTTGCCAATAAACCTAGGACATAACTCTCCGTTGCAGTGGTTAGACGTGTCCTCTAACTCATTATCAGGTGAAATTCCTCCAGGTTTGTGTACTTTTGGCAATCTCACAAAACTAATGCTCTTCAATAATTCCTTCTCTGGTTCCATTCCAAGTGGACTTTCAAATTGTTTGTCTTTGGTACGTGTTCGCATTCAGAACAATCTCATATCTGGGACTATTCCGGCTGGCTTCGGAAACCTTCCGGGCCTTCAGCGGCTGGAATTGGCACAGAACAACCTCACTGGGGAAATTCCAATAGATATAACTGCATCTTCATCGCTTTCTTTCATTGATGTATCTTGGAACCACCTTGAATCATCTCTTCCTTCTGGAATTCTTTCTATTCCGACCCTTCAAATTTTCATTGCCTCCAACAACAGACTGGAAGGCAATACTCCAGATGAGTTCCAAGACTGTCCATCTCTCTCTGTGCTGGATCTTTCAAACAACCATATATCTGGCAAAATCCCAGAAAGCATCGCTTCTTGCCAGAAATTAGTCAATCTGAACCTTCGAAAAAACCAGTTAACCGGGGAAATCCCGAAATCAATCACAAACATGCCCACCTTAGCCATTCTTGATCTGTCCAATAATTCACTGACTGGTCGGATACCTGAAAACTTTGGCAGTTCCCCAGCTCTGGAAATGCTCAACCTGTCCTACAATAAGCTTCAGGGCCCAGTACCCTCAAATGGGATTCTGACTACCATAAATCCTAATGATCTTATTGGCAATGCCGGTCTCTGCGGGGACATTCTTCCTCCATGTTCTCAGAGTTTCACTTTGACAAGCCAGCGAAGGAGCTCACACATGAAGCACATCATTATTGGTTTTATCACTGGCATATCAGTGATATTATCTCTTGGCATTGCATATTTCGGTGGTAGATGGTTATATAAGAAATGGTACTTGTATAACGGTTTCATGCATGATTGGTTCAGAAGGAGCAATGAAGAGTGGCCCTGGAGGTTAGTGGCATTCCAAAGGGTAAGTTTCACTAGTAGTGAGATCCTAACCTGTGTAAAGGAATCAAATATCATAGGTATGGGTGGCACTGGTATTGTGTACAAAGCCGAAATTCATAGACCTCATGTAACGGTGGCAGTGAAGAAACTATGGAGGTCAGGAACAGACATAGAAGATGGCAATGAAGTGTTAAGAGAAGTGAACCTCCTAGGGAGACTGAGGCATAGGAATATTGTAAGGCTATTTGGGTATGTTCACAATGAAAGAGATGTGATGATGGTGTACGAGTACATGCCCAATGGGAATCTTGGGACAGCACTACAGGGTGAACAAGGTGGAAGGTTGCTGGTAGATTGGGTTTCAAGGTACAACATAGCTGTTGGAGTAGCACAAGGCCTGAATTACCTGCACCATGATTGTCACCCACCAGTTATTCACAGGGATATCAAGTCTAACAACATACTCCTTGATGCAAATTTGGAGGCAAGGATAGCAGACTTCGGGTTGGCAAGGATGATGATCCAAAAGAAAGAGACAGTTTCAATGGTGGCTGGATCTTATGGATATATCGCACCAGAATATGGATACACTCTAAAGGTGGACGAGAAAATTGACATATACAGTTTTGGTGTCGTACTTCTAGAGCTCCTAACTGGCAAAAAGCCTTTAGACCCATCATTTGAAGAATCTGTGGACATGGTTGAATGGATACGAAAGAAGAGGAGCAATAGAGGGTTGGAAGAAACACTAGACCCCACCATTGCCGGTAAGTGCAAACATGTCCAAGAAGAGATGCTTCTTGTACTCCGGATAGCTCTTCTTTGTACTGCAAAGCTTCCCAAGGAAAGGCCATCCATGAGGGACATAGTCACTATGCTTGGAGAGGCAAAACCCAGAAGGAAAAGCGTTTGTCATAACGTAGTACACGACGGTTGTAAGGAAAAGCCAATCTTTACTACCTCCCCCATAGTAAGACTTCTGTAG 3051 0.4356 MHTHLLFFYFYIGLSLVFAEVAQGAASDEFSTLLLVKSSLTDPMKHLKDWQAPSNVTHNGSRHCNWTGVWCNSKGFVERLDLSNMNLSGRVSDHIQALSSLSSLDVSCNNFASSLPKSLSNLSSLKSFDVSQNYFTGSFPTGLGRAAGLRSINASSNDFLGFLPEDLGNATLLESLDFRGSYFEGSIPRSFKNLQKLAFLGLSGNNFTGKIPGELGELASLETLILGYNEFEGEIPAEFGNLTNLRYLDLAVGSLSAQIPPELGRMKKLTTIYLYKNKFQGKIPPEIGNISSLVFLDLSDNQISGELPEELANLKNLQLLNVMSNKLTGFVPEKLGELKNLQVLELWKNSLRGPLPINLGHNSPLQWLDVSSNSLSGEIPPGLCTFGNLTKLMLFNNSFSGSIPSGLSNCLSLVRVRIQNNLISGTIPAGFGNLPGLQRLELAQNNLTGEIPIDITASSSLSFIDVSWNHLESSLPSGILSIPTLQIFIASNNRLEGNTPDEFQDCPSLSVLDLSNNHISGKIPESIASCQKLVNLNLRKNQLTGEIPKSITNMPTLAILDLSNNSLTGRIPENFGSSPALEMLNLSYNKLQGPVPSNGILTTINPNDLIGNAGLCGDILPPCSQSFTLTSQRRSSHMKHIIIGFITGISVILSLGIAYFGGRWLYKKWYLYNGFMHDWFRRSNEEWPWRLVAFQRVSFTSSEILTCVKESNIIGMGGTGIVYKAEIHRPHVTVAVKKLWRSGTDIEDGNEVLREVNLLGRLRHRNIVRLFGYVHNERDVMMVYEYMPNGNLGTALQGEQGGRLLVDWVSRYNIAVGVAQGLNYLHHDCHPPVIHRDIKSNNILLDANLEARIADFGLARMMIQKKETVSMVAGSYGYIAPEYGYTLKVDEKIDIYSFGVVLLELLTGKKPLDPSFEESVDMVEWIRKKRSNRGLEETLDPTIAGKCKHVQEEMLLVLRIALLCTAKLPKERPSMRDIVTMLGEAKPRRKSVCHNVVHDGCKEKPIFTTSPIVRLL 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3827 1016 PRINTS Leucine-rich repeat signature 509 522 - -
Glsi02g3827 1016 PRINTS Leucine-rich repeat signature 554 567 - -
Glsi02g3827 1016 ProSiteProfiles Protein kinase domain profile. 708 997 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g3827 1016 Gene3D Ribonuclease Inhibitor 220 380 IPR032675 -
Glsi02g3827 1016 SMART LRR_typ_2 242 266 IPR003591 -
Glsi02g3827 1016 SMART LRR_typ_2 434 458 IPR003591 -
Glsi02g3827 1016 SMART LRR_typ_2 386 410 IPR003591 -
Glsi02g3827 1016 SMART LRR_typ_2 554 578 IPR003591 -
Glsi02g3827 1016 SMART LRR_typ_2 506 530 IPR003591 -
Glsi02g3827 1016 SMART LRR_typ_2 290 314 IPR003591 -
Glsi02g3827 1016 SMART LRR_typ_2 338 362 IPR003591 -
Glsi02g3827 1016 SMART LRR_typ_2 218 241 IPR003591 -
Glsi02g3827 1016 SMART LRR_typ_2 98 122 IPR003591 -
Glsi02g3827 1016 Pfam Leucine rich repeat 532 591 IPR001611 GO:0005515
Glsi02g3827 1016 Pfam Leucine rich repeat 100 159 IPR001611 GO:0005515
Glsi02g3827 1016 Pfam Leucine rich repeat 413 471 IPR001611 GO:0005515
Glsi02g3827 1016 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 365 627 - -
Glsi02g3827 1016 FunFam MDIS1-interacting receptor like kinase 1 708 790 - -
Glsi02g3827 1016 SUPERFAMILY L domain-like 61 309 - -
Glsi02g3827 1016 ProSiteProfiles Leucine-rich repeat profile. 292 315 IPR001611 GO:0005515
Glsi02g3827 1016 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 26 181 - -
Glsi02g3827 1016 ProSiteProfiles Leucine-rich repeat profile. 508 530 IPR001611 GO:0005515
Glsi02g3827 1016 Pfam Leucine Rich Repeat 509 530 IPR001611 GO:0005515
Glsi02g3827 1016 Gene3D Transferase(Phosphotransferase) domain 1 791 1002 - -
Glsi02g3827 1016 ProSitePatterns Protein kinases ATP-binding region signature. 714 738 IPR017441 GO:0005524
Glsi02g3827 1016 SUPERFAMILY Protein kinase-like (PK-like) 703 982 IPR011009 -
Glsi02g3827 1016 SUPERFAMILY RNI-like 258 600 - -
Glsi02g3827 1016 ProSitePatterns Serine/Threonine protein kinases active-site signature. 833 845 IPR008271 GO:0004672|GO:0006468
Glsi02g3827 1016 FunFam MDIS1-interacting receptor like kinase 1 791 1000 - -
Glsi02g3827 1016 Gene3D Phosphorylase Kinase; domain 1 708 790 - -
Glsi02g3827 1016 SMART serkin_6 708 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g3827 1016 Pfam Protein kinase domain 710 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g3827 1016 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 379 982 - -
Glsi02g3827 1016 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 182 282 - -
Glsi02g3827 1016 Pfam Leucine rich repeat N-terminal domain 27 72 IPR013210 -
Glsi02g3827 1016 Gene3D Ribonuclease Inhibitor 381 624 IPR032675 -
Glsi02g3827 1016 Gene3D Ribonuclease Inhibitor 28 147 IPR032675 -
Glsi02g3827 1016 Gene3D Ribonuclease Inhibitor 148 219 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3827 Glsi-ChrGlsi02 84557025 84560186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3827 4 1016 Receptor kinase-like Gene Family AT1G08590 64.016 0.0 1310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi02g3827 Pkinase 9.2e-49 CL0016