Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3820 ATGTTTCCCAAGTTAACACATGAAACATTTGCAAACAAGCTTTATCAAACATTTAAGAATCACAAGCGGTTTATAAAGCCAAAATTGTCTCGAACAGATTTCACCATTGCTCATTATGCTGGAGAGGTACAACTACAGCAACTAATGGAAACACTAAACTCTACAGAGCCTCGTTACATCAGATGTGTAAAACTGAACAACCTCCTTAAGCCTGCAATATTTGAGAATGTCAAAATCATGCAACAACTTCGCTGTGGTGGTGTTTTAGAGGCAATCAGAATCAGTTGTGCTGGTTACCCTACTCGCCGTCTTTTCTTTGAATTTGCAAACCGATTTGGACTCCTTGCTGCAGAGGCCATGGATGGAAAGCAAGTTGTTTGCCAAAAGATTCCGGAAAAAGTGGGGCTTAAAGAATATCAGATTGGGAAAAAAAAGATATTCATGAGAGCTGGTCAGATGGCTGAACTAGTTGCATGGAGAGCTCAAGTACTCAATACCACAGCAAAAACTATCCAACAGCACATACGAACCCATCAAGCTCGTAAACATTATCTTGCCTTGGGAGAGACTTCCTTATACATACAGTCTCTATGCAGAGGAAGACTCGCATGCAAACTTTATGAGAACATGAGAAGGGAGGCTTCTGCGATGAAAATTCAGAAGAACACGCACCGATATGAAGCTAGGAAAGCCTATAAGAGACTCCATGCATCAGTTCTTATCTTGCAAACAGGTTTAAGGACATTGGTTGCTTGTAATGAGTTCAGATTTAGGAAGCAGACCAAAGATGCAATCATTATTCAGGCTGCAATAAAAACTGGTGCACTTCAAGAAGCAAAGGATAAGCTTGAAAAACAAGTGGAGGAACTCCCTTGGCGTCTCCAATTGGAAAAAAAAGAAGTCAAAGCACAAGAAGTAGCAAAGCTGAGGATTCACTTCAGATGCATAGCAAAGTTGATGAAACTAATGGCCAATGCTTTACTTATCAAGGATCGGGAGGATGCAAAGAAAGCTATCATAGAAACACCTTATGTTATTAAAGAAACCCAGGTTCTAGGTACAAAGGACTCTTTGTAG 1077 0.403 MFPKLTHETFANKLYQTFKNHKRFIKPKLSRTDFTIAHYAGEVQLQQLMETLNSTEPRYIRCVKLNNLLKPAIFENVKIMQQLRCGGVLEAIRISCAGYPTRRLFFEFANRFGLLAAEAMDGKQVVCQKIPEKVGLKEYQIGKKKIFMRAGQMAELVAWRAQVLNTTAKTIQQHIRTHQARKHYLALGETSLYIQSLCRGRLACKLYENMRREASAMKIQKNTHRYEARKAYKRLHASVLILQTGLRTLVACNEFRFRKQTKDAIIIQAAIKTGALQEAKDKLEKQVEELPWRLQLEKKEVKAQEVAKLRIHFRCIAKLMKLMANALLIKDREDAKKAIIETPYVIKETQVLGTKDSL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3820 358 Gene3D - 99 158 - -
Glsi02g3820 358 SMART iq_5 211 233 IPR000048 GO:0005515
Glsi02g3820 358 SMART iq_5 163 185 IPR000048 GO:0005515
Glsi02g3820 358 SMART iq_5 186 208 IPR000048 GO:0005515
Glsi02g3820 358 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 214 IPR027417 -
Glsi02g3820 358 ProSiteProfiles IQ motif profile. 212 239 IPR000048 GO:0005515
Glsi02g3820 358 ProSiteProfiles Myosin motor domain profile. 1 161 IPR001609 GO:0003774|GO:0005524|GO:0016459
Glsi02g3820 358 ProSiteProfiles IQ motif profile. 189 216 IPR000048 GO:0005515
Glsi02g3820 358 Gene3D Kinesin motor domain 22 98 IPR036961 -
Glsi02g3820 358 Pfam Myosin head (motor domain) 44 149 IPR001609 GO:0003774|GO:0005524|GO:0016459
Glsi02g3820 358 Gene3D - 163 213 - -
Glsi02g3820 358 Gene3D - 214 266 - -
Glsi02g3820 358 FunFam unconventional myosin-Va 167 214 - -
Glsi02g3820 358 SMART MYSc_2a 1 162 IPR001609 GO:0003774|GO:0005524|GO:0016459
Glsi02g3820 358 Pfam IQ calmodulin-binding motif 168 184 IPR000048 GO:0005515
Glsi02g3820 358 PANTHER MYOSIN 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3820 Glsi-ChrGlsi02 84506342 84510547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3820 1 352 Myosins gene family AT1G54560 48.908 2.30e-126 394