Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3811 ATGGTCACTTCTGCGCAGCCCAAGCCTAAGAAATCGGCGGCGATGAAGAAACCGAAATCCTCGCCGTCGCATCCTCCCTTCGCTGAGATGATCAGTGATGCCGTTGTTAGTCTCAAAGAGAGGACCGGTTCGAGTCAGTATGCCATTACCAAGTTTATCGAGGAGAAGCACAAGCATTTGCCTCCCAACTTCAGGAAGCTTTTGCTGTACTATTTGAAGAAGTCGGTTGGTGCTGGAAAGCTAGTCAAGGTCAAGAACTCCTTCAAACTCCCACCAGCCCGATCGGCTTCTGTTAAGAAGCAGGCGGATGCTAAACCTGCAAAAGCTCTGTCTAAACCAAGCACCAAAACCGCTGGGACTGCGTCCAAGCCGCAGCCTAAAACCTCTGCAAAACCGAAAGTTGCTGCTAAGCCTAAAGCCGTCGCCAAACCCAAAACTGCCGCAGCAAGTGGCAAGGCAGCTGCGAAGTTGGCTAAGGCATCGGCGAGGACCGCATTGGGGAAGAAAGTTGTGAAGGCAGCGAAGAGTGTGAAGAAGCCGAAGAGTGTGAAATCGCCGGGGAAAAAAGCACCTGGGAAGAAGGCTAGGAAGTAG 594 0.5202 MVTSAQPKPKKSAAMKKPKSSPSHPPFAEMISDAVVSLKERTGSSQYAITKFIEEKHKHLPPNFRKLLLYYLKKSVGAGKLVKVKNSFKLPPARSASVKKQADAKPAKALSKPSTKTAGTASKPQPKTSAKPKVAAKPKAVAKPKTAAASGKAAAKLAKASARTALGKKVVKAAKSVKKPKSVKSPGKKAPGKKARK 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3811 197 PRINTS Histone H5 signature 37 54 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi02g3811 197 PRINTS Histone H5 signature 146 163 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi02g3811 197 PRINTS Histone H5 signature 10 31 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi02g3811 197 PRINTS Histone H5 signature 168 187 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi02g3811 197 MobiDBLite consensus disorder prediction 172 197 - -
Glsi02g3811 197 SUPERFAMILY "Winged helix" DNA-binding domain 20 102 IPR036390 -
Glsi02g3811 197 CDD H15 21 100 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi02g3811 197 Pfam linker histone H1 and H5 family 24 90 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi02g3811 197 PANTHER HISTONE H1 6 194 - -
Glsi02g3811 197 MobiDBLite consensus disorder prediction 113 127 - -
Glsi02g3811 197 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 23 92 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi02g3811 197 MobiDBLite consensus disorder prediction 1 28 - -
Glsi02g3811 197 SMART h15plus2 21 87 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi02g3811 197 Gene3D - 17 109 IPR036388 -
Glsi02g3811 197 MobiDBLite consensus disorder prediction 92 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3811 Glsi-ChrGlsi02 84444519 84445203 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3811 30 91 Single Myb Histone (SMH) Gene Family AT1G49950 40.323 1.74e-08 51.2