Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3806 ATGGCTAGCCAGGTCGTCAAAGTAAGGAGGGGGACGCTGGAAGCATGCATGACATGCCCTCTTTGTCATAAGTTGTTGAAGGATGCTACTACCATATCTCTCTGCCTTCATACGTTTTGCAGGAAGTGCATATATGAGAAACTCTCGGATGAGGAGGCAGATTGCTGTCCAGTATGCAATATTGATCTAGGCTGTCTTCCGGTGGAAAAACTAAGGCCAGATCACAATTTGCAAGACATCAGGGCAAAAATATTCCCTTTTAAAAGAAGAAAAGTTAAGGCCCCAGAAGCTGTGCCTTCAATATCGCTGCCAACAAAAAGGAAGGAAAGATCACTTTCATCATTGGTGATTACTGCTCCTAAAGTTCCAGTGCAGAGTGGCTTCACAGGAAAGAGAACAAAAAATGGTACAAGAAAGGCTGCTGCTTTACGTGGATGCAATTTTACTGTTGAAGAACCCATAAAAAAGGAAGAAGCATATGCTGAAGATAATCCAGATTCTTCTGTAGCTGAGCCTTCTAAGAAGAATAGGCCCAATGAAGCTACCGAGAATGATGTAGAACTTACAGAAGGGAAGGTTGATCTCTGGACACCCTTGAACTGTCTTGTTGAAGCTGCCAACAGAACAAGGTCCTCCAAGTTAAATTCACAAGGGTCATCTCTTTCCAAATTAGAGCCTTTAACTACTCCTCGTGGTGGACAAGATATGCCTGAAATTACAAGCAAATCAGAGCCATCTGCTTCCGTCCATACTGAACTACGTATGCCTAAAACAAAAAACAAGGATAACGAACATAAAACAAAATTTGGAGATGACAAGGTTGGAAACATCTTGCCTCCAGGACAAGTGAAGCGTAGAAGGGTGCGTCCAGCTGGTCAGAAAAGAGCAGCAGCATCTGAGATTTCTGCCTCAGCCCAACTTGTGCTAGATGCAACTGGGGGCGGGTGTAACAGAAAAAATAGTCCTATTTGGTTTTCATTGGTAGCATCAGAAGACCAGAAAGGAGATGTTCCCTTGCCGCAGATTTCAGCATGCTACTTAAGAATAAAGGATGGTACCGTGCCTGTCTCGTATATTCAAAAGTACCTTGTAAAGAAACTTAATCTTGCCAGCGAAGCAGAGGTGGAAATAATGTGCCGGGGTCGACCAGTGCTCCCATCTTTGCAACTTCATAACTTGGTAGAACTGTGGTTCCGGACAGCATCAACCTCAAAAAAGATACCAGCATCCGTGGGTTCCTCGGCTAAGGACTTTGTTATGGTTTTATCATATTGTCGAAAGGCCTTGGCTCCTTGA 1296 0.4383 MASQVVKVRRGTLEACMTCPLCHKLLKDATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPFKRRKVKAPEAVPSISLPTKRKERSLSSLVITAPKVPVQSGFTGKRTKNGTRKAAALRGCNFTVEEPIKKEEAYAEDNPDSSVAEPSKKNRPNEATENDVELTEGKVDLWTPLNCLVEAANRTRSSKLNSQGSSLSKLEPLTTPRGGQDMPEITSKSEPSASVHTELRMPKTKNKDNEHKTKFGDDKVGNILPPGQVKRRRVRPAGQKRAAASEISASAQLVLDATGGGCNRKNSPIWFSLVASEDQKGDVPLPQISACYLRIKDGTVPVSYIQKYLVKKLNLASEAEVEIMCRGRPVLPSLQLHNLVELWFRTASTSKKIPASVGSSAKDFVMVLSYCRKALAP 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3806 431 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Glsi02g3806 431 MobiDBLite consensus disorder prediction 209 227 - -
Glsi02g3806 431 SMART ring_2 19 59 IPR001841 -
Glsi02g3806 431 MobiDBLite consensus disorder prediction 234 248 - -
Glsi02g3806 431 MobiDBLite consensus disorder prediction 209 279 - -
Glsi02g3806 431 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Glsi02g3806 431 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Glsi02g3806 431 Gene3D - 307 406 - -
Glsi02g3806 431 MobiDBLite consensus disorder prediction 176 190 - -
Glsi02g3806 431 SUPERFAMILY RING/U-box 13 84 - -
Glsi02g3806 431 CDD RING-HC_PCGF 17 60 - -
Glsi02g3806 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 111 IPR013083 -
Glsi02g3806 431 MobiDBLite consensus disorder prediction 254 272 - -
Glsi02g3806 431 MobiDBLite consensus disorder prediction 156 190 - -
Glsi02g3806 431 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 428 IPR044807 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3806 Glsi-ChrGlsi02 84421260 84425484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3806 5 350 C3H Transcription Factor Family AT2G30580 43.407 1.18e-85 263