Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3798 ATGGCGTGCAATTCCTCGGAGGGATTGGGTGACGATTTTTTGGAGCAGATCTTGGCTGTGCCTTCAGCGTACAGCAACAGTGAGGGGGCAGGCATGCCTCCAATGGTGCTACAGTTGGGGTCTGGCAGTGGCGGCGGCGGCGGATTGAGAGGATCCTTAGGGATAGGGATGGGTATGCCTTTGGGTTTGAATTTAGAACAAGGGTTTCTCAGACAAGATGGTAGTAGACGGTTCAGTGATGATGTTGTTGAAGGCAACAATGTCAATAACTATCATCTCCATCTTAATAACACCAACAATAACAGCACTACTTCTTCTTCTTCTTCTACTTCTGGAATCACTGAGAGGAAGTCGGTGCATAGAACGACGGGCCCTGGCTTGCTTTCAGCGTTTGGACAATTGCACGCTCGGCCGACGATGCCATCTCCGCTGCCTCCTCCACCCCAACTCCACCCTCAGCCCTTTCATAGCCAGCCACCAACTCCAGTGTCTGTTGCTGCCATACCACAACCACCTGCTATCCGCCCTAGAGTACGAGCCAGAAGAGGGCAAGCCACAGATCCCCATAGTATTGCTGAACGGTTACGTCGTGAAAGAATTGCTGAAAGAATGAAGGCACTGCAGGAATTAGTTCCCAGCGCCAACAAGACGGACAGAGCTGCAATGCTTGATGAAATTGTGGATTATGTGAAGTTTCTCAGGCTCCAGGTTAAGGTCCTCAGCATGAGTAGATTGGGCGGGACTGGTGCAGTAGCTCAGCTTGTGGCTGATATTCCCCTATCTGCGGTGGAGGTGGGTGATAGCATTGAAGGTGGAAGCAATCATCAAGCATGGGAGAAGTGGTCCGATGATGGTACAGAACGAGAAGTTGCAAAACTGATGGAAGAAGATGTTGGAGCTGCTATGCAATTTCTTCAGTCCAAGGCACTTTGCATCATGCCTATATCTCTAGCTTCAGCGATTTTTCGTACGCCCCAATCAGATGCTTCTACACTCATCAAACCTGAATCAAACAGCCATTCCTAG 1026 0.499 MACNSSEGLGDDFLEQILAVPSAYSNSEGAGMPPMVLQLGSGSGGGGGLRGSLGIGMGMPLGLNLEQGFLRQDGSRRFSDDVVEGNNVNNYHLHLNNTNNNSTTSSSSSTSGITERKSVHRTTGPGLLSAFGQLHARPTMPSPLPPPPQLHPQPFHSQPPTPVSVAAIPQPPAIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSANKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGTGAVAQLVADIPLSAVEVGDSIEGGSNHQAWEKWSDDGTEREVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRTPQSDASTLIKPESNSHS 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3798 341 Pfam Helix-loop-helix DNA-binding domain 189 233 IPR011598 GO:0046983
Glsi02g3798 341 MobiDBLite consensus disorder prediction 92 163 - -
Glsi02g3798 341 FunFam Transcription factor bHLH66 181 246 - -
Glsi02g3798 341 MobiDBLite consensus disorder prediction 139 163 - -
Glsi02g3798 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 182 243 IPR036638 GO:0046983
Glsi02g3798 341 SMART finulus 190 239 IPR011598 GO:0046983
Glsi02g3798 341 MobiDBLite consensus disorder prediction 92 118 - -
Glsi02g3798 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 184 233 IPR011598 GO:0046983
Glsi02g3798 341 Gene3D - 179 241 IPR036638 GO:0046983
Glsi02g3798 341 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 64 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3798 Glsi-ChrGlsi02 84381033 84384902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3798 148 338 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 71.354 1.33e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi02g3798 HLH 9.2e-08 No_clan