Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3790 ATGGAGCTTCCTTCGAACCTATTGCCTGACGAGGCGAGCCCGGACTGGATGAACAAAGGGGACAACGCGTGGCAACTGACGGCAGCCACGGTAGTGGGTCTCCAAAGCATTCCGGGGCTGGTAATCCTGTATGGAAGCCTGGTCAAAAGGACGTGGGCCATTAACTCTGCTTTCATGGCATTTTACGCCTTCGCAGCCGTTCTCCTCTGCTGGGTTGGCTGGGCTTTCCGCATGTCATTTGGTGAAAAACTAGTTTTTTTCCTGGGAAAACCAGCAGTGGCATTGGATGAGAAGTACCTTTTGGGGAAAGCATTTCTGGGGTCGTTTCCCACAGCTACAATGGTGTTTTTTCAGGGTGTTTTTGCAGGGATAACGTTGATTTTGATAGCTGGAGCGTTGCTGGGGAGGATGAACATTCGAGCATGGATGCTGTTTGTGCCACTGTGGGTTACAGTTTCATACACTGTCACTGCCTTTAGTATTTGGTGTCCCGATGGGTGGCTCGCTAAGCACGGGGTTATCGATTTCTCTGGGGGGTATGTCATTCACCTCTCCGCCGGAGTTGCTGGTTTTACCGCTGCTTATTGGGTGGGTCCGAGATCAGATACGGACAGAGACAAGTGTCCACCAACACCAAACAACATGATTCTGGTGCTTGCAGGCGCAGGCCTGCTCTGGATGGGGTGGAGTGGATTCAACGGTGGAGGTCCGTTCGTGGTTAGCACGGTTGCATCTCTGGCCGTCCTCAATACACACGTGTGTGCTGCCACTAGCATCCTGGTGTGGGTCATCCTGGATACCTTCTACTTGGGGAAACCCACAGTGTTGGGGGCCGTACAGGGAATGATCACTGGACTAGTTTGCATTACACCCGCCGCAGGGGTTGTGCAAGGCTGGGCGGCCATCATAATGGGATTGATCTCAGGAAGCATTCCCTGGTACACCATGACGGTACTCCACGACAAGGTGACCTTCTTAAAGCAAATCGACGACCCCATGGCCGTCTTCCACACCCACGCTATTGCGGGTGTTCTCGGGGGCATTCTCACCGGCTTCTTCGCCGTCCCTAAATTGTGCCGTCTCTTCTACATGGTGCCTGATTGGGAAAAATACATTGGCCTTGCCTACGCCCTTCAGAATGGTACAACTTCTGCGGGTTTGAGACAAATGGGGATCCAACTTGGAGCTATTGTGTTCGTGATTTGCTTCAACGTTGTGATTACCAGCTTGATTTGCTTGGTTGTGAGGATAATAATGCCACTTAGAGTAGAGAGCGAGGAATTGGGAATGGGCGACAGGGCAATACATGGAGAGGAGGCTTTTGCATTGTGGAGTACTGAGGGTGCAAGATTTCAGAATCTGAAACGCAATAAAGTTTATGATGCCCAAGATTACCCATCCTTTGCCTCCTCAAGATCAATAGGAGAAGTTCAAATGGTGTAA 1443 0.5114 MELPSNLLPDEASPDWMNKGDNAWQLTAATVVGLQSIPGLVILYGSLVKRTWAINSAFMAFYAFAAVLLCWVGWAFRMSFGEKLVFFLGKPAVALDEKYLLGKAFLGSFPTATMVFFQGVFAGITLILIAGALLGRMNIRAWMLFVPLWVTVSYTVTAFSIWCPDGWLAKHGVIDFSGGYVIHLSAGVAGFTAAYWVGPRSDTDRDKCPPTPNNMILVLAGAGLLWMGWSGFNGGGPFVVSTVASLAVLNTHVCAATSILVWVILDTFYLGKPTVLGAVQGMITGLVCITPAAGVVQGWAAIIMGLISGSIPWYTMTVLHDKVTFLKQIDDPMAVFHTHAIAGVLGGILTGFFAVPKLCRLFYMVPDWEKYIGLAYALQNGTTSAGLRQMGIQLGAIVFVICFNVVITSLICLVVRIIMPLRVESEELGMGDRAIHGEEAFALWSTEGARFQNLKRNKVYDAQDYPSFASSRSIGEVQMV 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3790 480 FunFam Ammonium transporter 6 444 - -
Glsi02g3790 480 ProSitePatterns Ammonium transporters signature. 175 200 IPR018047 GO:0008519|GO:0016020|GO:0072488
Glsi02g3790 480 Gene3D Ammonium transporter AmtB like domains 7 459 IPR029020 -
Glsi02g3790 480 PRINTS Rhesus blood group protein signature 118 134 IPR002229 GO:0005886
Glsi02g3790 480 PRINTS Rhesus blood group protein signature 216 234 IPR002229 GO:0005886
Glsi02g3790 480 PRINTS Rhesus blood group protein signature 247 269 IPR002229 GO:0005886
Glsi02g3790 480 PRINTS Rhesus blood group protein signature 302 320 IPR002229 GO:0005886
Glsi02g3790 480 PRINTS Rhesus blood group protein signature 340 356 IPR002229 GO:0005886
Glsi02g3790 480 SUPERFAMILY Ammonium transporter 16 423 - -
Glsi02g3790 480 NCBIfam ammonium transporter 21 440 IPR001905 GO:0008519|GO:0016020|GO:0072488
Glsi02g3790 480 PANTHER AMMONIUM TRANSPORTER MEP2 5 448 IPR001905 GO:0008519|GO:0016020|GO:0072488
Glsi02g3790 480 Pfam Ammonium Transporter Family 23 440 IPR024041 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3790 Glsi-ChrGlsi02 84345922 84347544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3790 112 468 Inorganic Solute Cotransporters AT2G38290 53.611 1.23e-125 368