Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3782 ATGAGTTGCCAAGGCTTTCATTCTATGCTTGTTGCAATGCCTTCTTGTATTTTCAGCAATGTTAGCCCGTTTACAGAAAATGTAGGAAAGGAAGCATTGATTAAACATGCTCGGTCTGGTCTGTACCCAGGAGAGGGAAATCTCTTATTTGTTGAACACATGGAGCAGTATGAAGTACTTGAGCAAATTGGTAAAGGTGCCTTTGGTTCTGCTCTTCTTGTGAGGCATAAGCATGAGAAGAAAAAATATGTGCTGAAGAAGATTCGCCTAGCCCGCCAAACGGAGCGATCTCGTAGATCTGCACACCAGGAAATGGAGCTCATCTCTAAATTAAGAAATCCATTCATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTGTGCATTATTATAGGTTACTGTGAGAGTGGAGATATGGCAGAAGCTATAAAGAAAGCTAATGGTGTTCTTTTTCCTGAGGAGAAACTTTGTAAGTGGCTTGTTCAACTTCTTATGGCACTTGACTACTTGCACATGAACCATATTCTTCATCGCGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGACATACGCCTTGGTGATTTTGGACTTGCCAAAATGTTGACTTCAGATGATCTTGCTTCCTCCGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATACCTTATGGTTCTAAATCAGATATTTGGTCTTTGGGATGTTGTATATATGAAATGACAGCACATAAGCCTGCATTTAAAGCATTTGATATACAAGCCCTAATCAACAAAATTAACAAGTCCATAGTTGCTCCACTGCCAACAAAGTATTCCGGTGCATTTCGAGGTCTTGTTAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGACCAAGTGCTGCAGAGCTGCTTGGGCACTCTCATCTTCAACCTTATGTTCTCAAGATCCATCTCAAAATCAATAACCCCAGGCGAAATACTTTACCAGCTCATTGGGCAGAATCCAATTACTTGAAGAAAACTAGATTTTCGGAGCCAGAATATGAACCTGTTTCAATCTATAGGAATAAGCGGCATTCCTTCAGCAATGACCGGACTCTAAATCCTAGTGTATCTGGAGCAGAGCAAGATTCATTATGCTCTACCCTCGAAATAGATTGTACCCCAGATCAATTGAATCATAGGTTAATAGAACTGAGTGTTGGGGATAGCCCTGAGGTGAATTCAATCAGTAAGCCTGTAGTTTCCAGAACTTCCAGTATTGCCAAGACGGCTAGACTTATTTCATCAAAAGCTTCAGCCACGCCTAAGAAGTCAATGAAGTCTAAAAATAACTGTGAACTGCTTCCTGTTTCACGCAATGCCAGAAAATCGGTCAATACAACTCGCAGAGCATCGTTTCCATTGCCTACAAGAGGTGCTATTCAACAATCTCCTTGCAGGCCTGGTATTCTTGGCCATACAAAATCACCAGATATTTCGGTCAACTCTCCCCGAATTGACAGGATAGCTGAATTCCCATTAGCATCATATGAGGATCCACTTTTCTCCATTAAAAGAACTTCATCAACCGCTGCACAGGGTTCCTCTGGCTCCCCACATTGTGATGATCGTTCAATCATGAAAGACAAATGCACAGTTCAGGTATGTGATAGAACCACTGTCAGGCCTAGTTTGACAGATGCTTGGCAGAGAACCAAGCGCAGCATGTTTCGGGAAAATGATGAGGTGAAAAGTGGCTCCTCTGATCAAAATGCAACTGCTGGAGCATCAAGCCGTGCCTCTTCAGACTGGTGCCGCCGGCATTTTGACACTTCATCATTCCAACAAAGGGCTGAAGCCTTAGAAGGGTTGCTTGAATTCAGTGCAAGGTTGCTACAACAAGAAAGGTATGAGGAACTTGGGGTTTTGTTGAAACCATTTGGGCTTGAGAAGGTCTCTCCAAGGGAAACTGCTATCTGGTTGAGCAAGAGCTTCAAAGAGAACACTCAACCGTGA 2004 0.4256 MSCQGFHSMLVAMPSCIFSNVSPFTENVGKEALIKHARSGLYPGEGNLLFVEHMEQYEVLEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHQEMELISKLRNPFIVEYKDSWVEKGCYVCIIIGYCESGDMAEAIKKANGVLFPEEKLCKWLVQLLMALDYLHMNHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTAHKPAFKAFDIQALINKINKSIVAPLPTKYSGAFRGLVKSMLRKNPELRPSAAELLGHSHLQPYVLKIHLKINNPRRNTLPAHWAESNYLKKTRFSEPEYEPVSIYRNKRHSFSNDRTLNPSVSGAEQDSLCSTLEIDCTPDQLNHRLIELSVGDSPEVNSISKPVVSRTSSIAKTARLISSKASATPKKSMKSKNNCELLPVSRNARKSVNTTRRASFPLPTRGAIQQSPCRPGILGHTKSPDISVNSPRIDRIAEFPLASYEDPLFSIKRTSSTAAQGSSGSPHCDDRSIMKDKCTVQVCDRTTVRPSLTDAWQRTKRSMFRENDEVKSGSSDQNATAGASSRASSDWCRRHFDTSSFQQRAEALEGLLEFSARLLQQERYEELGVLLKPFGLEKVSPRETAIWLSKSFKENTQP 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3782 667 FunFam Serine/threonine-protein kinase Nek2 54 136 - -
Glsi02g3782 667 MobiDBLite consensus disorder prediction 572 595 - -
Glsi02g3782 667 Gene3D Phosphorylase Kinase; domain 1 34 136 - -
Glsi02g3782 667 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 54 622 - -
Glsi02g3782 667 Pfam Protein kinase domain 57 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g3782 667 CDD STKc_Nek 56 306 - -
Glsi02g3782 667 FunFam Serine/threonine-protein kinase Nek3 139 385 - -
Glsi02g3782 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Glsi02g3782 667 MobiDBLite consensus disorder prediction 474 495 - -
Glsi02g3782 667 ProSitePatterns Protein kinases ATP-binding region signature. 63 86 IPR017441 GO:0005524
Glsi02g3782 667 Gene3D Transferase(Phosphotransferase) domain 1 137 325 - -
Glsi02g3782 667 SUPERFAMILY Protein kinase-like (PK-like) 54 354 IPR011009 -
Glsi02g3782 667 ProSiteProfiles Protein kinase domain profile. 57 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g3782 667 SMART serkin_6 57 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3782 Glsi-ChrGlsi02 84286536 84294025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3782 63 312 MAP Kinase Kinase Kinase AT1G53570 31.373 7.13e-35 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Glsi02g3782 Pkinase 4.8e-63 CL0016