LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi02g3781	ATGTTCGATGGAGTACCAGATCAGTTTCACCAATTCTTGGCACCAAGAACCTCAATTCCACTTCACTTGTCTTTCCCTCTCCATGCCTCTGCAACTCCCAATCCCTTTGATCCTTACTTACCAGTACTCCAACCTAATCTCTTGCACCCCTTGCACCACCACTCTCCTTTCCACAAAGATGAAGAGAAGGAACAGAATAATGGCGGGGTCTCAATGAACTTGCAGATTCAAAGTGAAAGGCAGCTGACTGATCCCTGCTGGACTAACGATGAAGTGCTTTCGTTATTGAGGATCAGATCTAGTATGGAGAGTTGGTTCCCAGACCTCACTTGGGAACACGTCTCAAGGAAGCTAGCAGAGCTTGGATTTAAGAGGAGTGCAGAGAAGTGCAAGGAGAAGTTTGAAGAAGAAAGTAGATACCTCAACAACATTAATTACAACGAGAATTACCGGTTTCTTAGTGAGCTTGAAGAGTTTTATCAAGGGGATCAAAACCCTGAGGTTGGTACTGAAAAGACCCAGCATCTGGAAAAGCCAAGCGAGGGACAAGACAAGACGGGCCACGCATTGGAAGAGGGTTCTAGACACGACAAATCAGCCACCAAACAATGCTTGGTGGAAAAATCAAAGGGCAGGAAGAGAAAGAGGCAGAATCACAAATTTGAGATGCTCAAGGGTTTTTGTGAGAAAATGGTGAACAAGATGATGGCTCAACAAGAAGAGATGCACAATAAGCTTCTTGAAGATATCCTGAAAAGAGATGAGGAGAAGTTTGCAAGAGAGGAAGCCTGGAATAAGCAAGAGATGGATAGGATGAATAAGGAGCTTGAAATGATGGTACAAGAGCAAGCTGTGGCCGGCGATCGGCAGGCCACCGTAATAGAATTCTTGAAGAAGTTTGCAGCAAATTCTCCCGGAAGCCAAAGTTTTGGAAGCGTGAACAGTGAAGATAATCTCAAGGTAACAAACAGTTCAAATCCAAACACCCACACTTCTTCTCCCCTATTACACTCGCAAAACCCTAATGTTTCTAGTGATATTAATGGGGAGAACAATCTTGAGCCCCCGCCTTGTTCTACAATGATGATAAATCATCATGATACAGTTTTACCCACTACGTGCCCTAGTACAGTTCTAGCAGCACAAAACCCTAGCTCAAGCCTTGCCCATGACACATTAGAAGTTCCCTCTTCATCTACTTCAGCTCTAGCCTCACAGAACGCTAGTTCTCAGAAAGGCAATTCAATTTCAACATGCAAGGCGTCCTCAAACCCAACGACGAGCGGGAAAGGAGATGTTGGGAGGAGATGGCCAAGAGATGAAGTCTTAGCACTAATAAACCTGAGGTGCAGTCTAAATAACAACTGTGAAGGCAAGGACGGAAACAAGGCTCCCCTGTGGGAGAGAATCTCGCAAGGAATGTCAGAGTCTGGATACAAGAGAAGTGCAAAGAGATGTAAAGAAAAATGGGAGAACATAAACAAGTACTTCAGAAAAACCAAAGATATTAATAAGAAGAGGTCGCTTGACTCCAGGACTTGTCCCTATTTTCATCAGCTGAGTACTTTGTATAGTCAAGGGAAGCTTGTTCCACAATCTGATCAAAGGCCGGAATACCAAATGAGATCACCGGAAAATCACCCGCAAATGCCACCAGAAGCCCAAGTTGAGCCTTCTCAAGTGGGGTCTAGTGCTGGTCCTTTCAGTATTCATGTAGATGGAGGTGAGAAAACTGTGATGCAAGTACCTTCTTTGGACTTGGATCATCAGTTCTAA	1776	0.4443	MFDGVPDQFHQFLAPRTSIPLHLSFPLHASATPNPFDPYLPVLQPNLLHPLHHHSPFHKDEEKEQNNGGVSMNLQIQSERQLTDPCWTNDEVLSLLRIRSSMESWFPDLTWEHVSRKLAELGFKRSAEKCKEKFEEESRYLNNINYNENYRFLSELEEFYQGDQNPEVGTEKTQHLEKPSEGQDKTGHALEEGSRHDKSATKQCLVEKSKGRKRKRQNHKFEMLKGFCEKMVNKMMAQQEEMHNKLLEDILKRDEEKFAREEAWNKQEMDRMNKELEMMVQEQAVAGDRQATVIEFLKKFAANSPGSQSFGSVNSEDNLKVTNSSNPNTHTSSPLLHSQNPNVSSDINGENNLEPPPCSTMMINHHDTVLPTTCPSTVLAAQNPSSSLAHDTLEVPSSSTSALASQNASSQKGNSISTCKASSNPTTSGKGDVGRRWPRDEVLALINLRCSLNNNCEGKDGNKAPLWERISQGMSESGYKRSAKRCKEKWENINKYFRKTKDINKKRSLDSRTCPYFHQLSTLYSQGKLVPQSDQRPEYQMRSPENHPQMPPEAQVEPSQVGSSAGPFSIHVDGGEKTVMQVPSLDLDHQF	591

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi02g3781	591	FunFam	Trihelix transcription factor GT-2	87	143	-	-
	Glsi02g3781	591	MobiDBLite	consensus disorder prediction	528	576	-	-
	Glsi02g3781	591	Pfam	Myb/SANT-like DNA-binding domain	85	145	IPR044822	-
	Glsi02g3781	591	Pfam	Myb/SANT-like DNA-binding domain	435	522	IPR044822	-
	Glsi02g3781	591	SMART	sant	83	140	IPR001005	-
	Glsi02g3781	591	SMART	sant	433	496	IPR001005	-
	Glsi02g3781	591	MobiDBLite	consensus disorder prediction	305	364	-	-
	Glsi02g3781	591	MobiDBLite	consensus disorder prediction	165	216	-	-
	Glsi02g3781	591	ProSiteProfiles	Myb-like domain profile.	436	494	IPR001005	-
	Glsi02g3781	591	MobiDBLite	consensus disorder prediction	170	207	-	-
	Glsi02g3781	591	MobiDBLite	consensus disorder prediction	389	435	-	-
	Glsi02g3781	591	ProSiteProfiles	Myb-like domain profile.	87	138	IPR001005	-
	Glsi02g3781	591	MobiDBLite	consensus disorder prediction	389	430	-	-
	Glsi02g3781	591	MobiDBLite	consensus disorder prediction	305	358	-	-
	Glsi02g3781	591	FunFam	Trihelix transcription factor GT-2	437	499	-	-
	Glsi02g3781	591	CDD	GT1	435	501	-	-
	Glsi02g3781	591	Gene3D	-	437	499	-	-
	Glsi02g3781	591	Gene3D	-	87	142	-	-
	Glsi02g3781	591	PANTHER	FI21293P1	58	566	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi02g3781	Glsi-ChrGlsi02	84281070	84283248	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi02g3781	87	588	Trihelix Transcription Factor Family	AT5G28300	38.648	5.15e-92	294

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	Trihelix	Glsi02g3781		Myb_DNA-bind_4	1e-19	CL0123