Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3760 ATGAAGAACATTTTCAAGAAGCTTCACAAAGGGAGCAACCACGACCCTAATCGATCCAATGAAACTTCGGCTTCCGTAGCATCGCCGACTTGCGCCTCCGATCAACGTACCCTTCCCCTTCAGAACTCTGGAACGTCTCTGGCTAGTCCTTCTTCATCATCTCCCTCTACAGCAGCTGGCGGCGCTTCCCACCCGCCACCCGCTATGGCCAATCGGCAAGATTATTTTTCGTCCGAGGAGGAGTTTCAGGTTCAGCTAGCCCTAGCTATCAGCGCTTCGAATTCTGATTTCGGAGATGATCCTGACAAGGATCAGATCCGAGCGGCAACGCTGCTGAGCTTGGGAGGTCATCGAATTGATTCAGCGAGGAATCAGGATGACTTGGCGGAGGCGCTGTCGAGGCAGTACTGGGAATACAATGTGCTTGACTATGAGGAGAAAGTAGTAGATGGTTTTTATGATGTATATGGCCACTGTACGGATTCAGCAATGCAAGGAAAGATGCCATCTCTGACAGATCTTGAAGCAAACCCTGGAAGTTCAAGCTTGGAAGTTGTCATAGTGAATCGAACAATTGATCCTGCCCTGGAAGAGCTGGTGCAAATTGCGCATTGTGTAGCATTAGACTGTCCTGTCACTGAGGTTGGTATTCTGGTACAAAGGCTGGCTGAACTTGTTACAGGGCATATGGGTGGCCCTGTAAAGGATGCTAATATTATATTGGCAAGATGGACAGAAAGAAGTACAGAGCTACAGACATCTCTCCACACAAGCGTGTTACCTCTTGGATCCTTAAATATTGGGCTCTCTAGACACCGAGCATTGCTTTTCAAGGTATTAGCTGACAATATCAAGATGCCTTGTAGACTGGTAAAAGGTAGTCATTACACTGGTGTTGAGGATGATGCTGTCAACATTATAAAGTTGGAGGATGAAAGGGAGTTTTTGGTTGATCTCATGGCTGCTCCTGGAACACTTATCCCGACTGATATTTTTAATGCAAAGGATCCTGCCTTTAAGGCATACAATCCCAAGAGTTTGCCAAGTTTACAATCCACTAAAGAAAATGGATTTTCTTACTCAAGACCAATGCCATCTCATGGTGAAGGCAGTAGTCAAAATTCCATGATCAGAGGTGGTACACCACCCTTGAATGTTAAACCATATTCTGAGAAGTCAGATTATATGTCTTCTAACTTGGGTTTGAGTGGAGACACTGGTATCGGCCCTTCCAAAAGGCCTACTAAAGCAACTCCTAGCCAACTGGAAAATATGTCCCCATCTGCTGGTACTTCTCTGTACAAAGGGACTCGTGGAATGAATACTATTGGTGATGGGACAAGGCTGAATGTCAATGTCGTACCATATGGTCAGAATAGCCCAGATGACTCTAGGAGCCTTTTTGCGGATCTTAACCCATTCCAGATAAAAGGAACTGGCAAGACCGCTGCTGTACATAACAAACCTGTGGAAAATAAAGCTCCTGAGATTAATAATACAAGAGAAAATACTGTTTCTGGTCGACCTCCAGTACCATTGATGTGGAAAAATCGTTATGCTTACAATGAAATCCCCAGGAAAGTTAACCGTAATCCTAATGAATATAGTCCTTCTCTATTAGCTTCCAATAGTTCTTCCATATCTGAAAAGATTGAGCTCACTGGCACCAACCCATCATACAATTCAAATATAAACGGACTTAAAAATACTCGACAAATAATGCAAGGTACTAGTTCAGCATCGGCATCTAGTGCAGGTGATCTGAACAGGGTTGAGGATCTCAATGCTGAATGGAATAAAGGGAGTGTGGAAAGTTCTCGAAATGACATGGTAGATGTGGTTATAGAACTAGATAACAATGAAATTGGATTTCATGACCGAAGAAAGTGCACACATGACAGATTCATGGGGAGCAATTTGAAATTAAAGGATCCAGAGAGTCCTAGCTCATCAATTGATTCCATCACAAACAGGGTTGACCAAATATTGGATGATGTAGATGTGGGTGAATGTGAAATTCCATGGGAGGATCTGGTTATTGGTGAAAGGATTGGACTAGGTTCATATGGCGAGGTATACCATGCTGACTGGAATGGCACAGAGGTTGCTGTGAAAAAGTTTTTGGATCAGGATTTTTCAGGTGCTGCCTTGGCTGAATTCAAAAGAGAAGTACGGATAATGCGTAGATTACGTCATCCAAATGTTGTCCTTTTTATGGGTGCCGTTACTCGTCCTCCCAATCTCTCTATCATTACAGAGTTTCTTCCTAGAGGAAGCTTGTACCGAATTCTTCATCGTCCTAATTGTCAGATTGATGAGAAACGCAGAATAAAAATGGCTCTGGATGTGGCAAGGGGCATGAATTGCTTACACACCAGCACACCTACGATTGTTCACCGAGATCTGAAGTCGCCAAATCTCTTGGTTGATAAGAACTGGAATGTCAAGGTATGTGATTTTGGGTTGTCACGCTTGAAGCACAACACGTTTTTATCATCCAAGTCAACTGCTGGAACGCCTGAATGGATGGCTCCAGAGGTTCTTCGCAATGAGCCCTCAAATGAGAAGTGTGACGTATATAGTTTTGGAGTCATACTATGGGAGCTTGCCACTCTAAGGTTGCCATGGAGTGGGATGAATCCTATGCAAGTCGTTGGTGCTGTAGGTTTCCAAAATCGTCGCCTAGATATTCCCAAGGAAGTTGATCCTTTAGTTGCAAGAATTATCTGGGAATGTTGGCAACAGGATCCCAATTTGCGTCCTTCATTTGCACAGCTCACTGCAGCTCTAAAGCCCCTGCAGCGTCTAGTTATACCATCTCATCAAGACCAGCTGGCTTCAACTCTGCCACAGGAGATTTCTGTAAATTCTACCCCATGA 2880 0.441 MKNIFKKLHKGSNHDPNRSNETSASVASPTCASDQRTLPLQNSGTSLASPSSSSPSTAAGGASHPPPAMANRQDYFSSEEEFQVQLALAISASNSDFGDDPDKDQIRAATLLSLGGHRIDSARNQDDLAEALSRQYWEYNVLDYEEKVVDGFYDVYGHCTDSAMQGKMPSLTDLEANPGSSSLEVVIVNRTIDPALEELVQIAHCVALDCPVTEVGILVQRLAELVTGHMGGPVKDANIILARWTERSTELQTSLHTSVLPLGSLNIGLSRHRALLFKVLADNIKMPCRLVKGSHYTGVEDDAVNIIKLEDEREFLVDLMAAPGTLIPTDIFNAKDPAFKAYNPKSLPSLQSTKENGFSYSRPMPSHGEGSSQNSMIRGGTPPLNVKPYSEKSDYMSSNLGLSGDTGIGPSKRPTKATPSQLENMSPSAGTSLYKGTRGMNTIGDGTRLNVNVVPYGQNSPDDSRSLFADLNPFQIKGTGKTAAVHNKPVENKAPEINNTRENTVSGRPPVPLMWKNRYAYNEIPRKVNRNPNEYSPSLLASNSSSISEKIELTGTNPSYNSNINGLKNTRQIMQGTSSASASSAGDLNRVEDLNAEWNKGSVESSRNDMVDVVIELDNNEIGFHDRRKCTHDRFMGSNLKLKDPESPSSSIDSITNRVDQILDDVDVGECEIPWEDLVIGERIGLGSYGEVYHADWNGTEVAVKKFLDQDFSGAALAEFKREVRIMRRLRHPNVVLFMGAVTRPPNLSIITEFLPRGSLYRILHRPNCQIDEKRRIKMALDVARGMNCLHTSTPTIVHRDLKSPNLLVDKNWNVKVCDFGLSRLKHNTFLSSKSTAGTPEWMAPEVLRNEPSNEKCDVYSFGVILWELATLRLPWSGMNPMQVVGAVGFQNRRLDIPKEVDPLVARIIWECWQQDPNLRPSFAQLTAALKPLQRLVIPSHQDQLASTLPQEISVNSTP 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3760 959 PRINTS Tyrosine kinase catalytic domain signature 752 765 IPR001245 GO:0004672|GO:0006468
Glsi02g3760 959 PRINTS Tyrosine kinase catalytic domain signature 857 879 IPR001245 GO:0004672|GO:0006468
Glsi02g3760 959 PRINTS Tyrosine kinase catalytic domain signature 901 923 IPR001245 GO:0004672|GO:0006468
Glsi02g3760 959 PRINTS Tyrosine kinase catalytic domain signature 791 809 IPR001245 GO:0004672|GO:0006468
Glsi02g3760 959 PRINTS Tyrosine kinase catalytic domain signature 838 848 IPR001245 GO:0004672|GO:0006468
Glsi02g3760 959 Pfam Ethylene-responsive protein kinase Le-CTR1 129 327 - -
Glsi02g3760 959 Pfam Protein tyrosine and serine/threonine kinase 679 929 IPR001245 GO:0004672|GO:0006468
Glsi02g3760 959 MobiDBLite consensus disorder prediction 350 379 - -
Glsi02g3760 959 MobiDBLite consensus disorder prediction 1 71 - -
Glsi02g3760 959 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 65 934 - -
Glsi02g3760 959 FunFam Serine/threonine-protein kinase isoform 1 669 756 - -
Glsi02g3760 959 ProSitePatterns Protein kinases ATP-binding region signature. 684 706 IPR017441 GO:0005524
Glsi02g3760 959 ProSitePatterns Serine/Threonine protein kinases active-site signature. 797 809 IPR008271 GO:0004672|GO:0006468
Glsi02g3760 959 ProSiteProfiles Protein kinase domain profile. 678 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g3760 959 FunFam Serine/threonine-protein kinase CTR1 757 940 - -
Glsi02g3760 959 Gene3D Transferase(Phosphotransferase) domain 1 757 940 - -
Glsi02g3760 959 MobiDBLite consensus disorder prediction 17 60 - -
Glsi02g3760 959 Gene3D Phosphorylase Kinase; domain 1 671 755 - -
Glsi02g3760 959 SUPERFAMILY Protein kinase-like (PK-like) 668 945 IPR011009 -
Glsi02g3760 959 MobiDBLite consensus disorder prediction 401 435 - -
Glsi02g3760 959 MobiDBLite consensus disorder prediction 413 435 - -
Glsi02g3760 959 SMART serkin_6 678 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g3760 959 CDD STKc_MAP3K-like 684 930 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3760 Glsi-ChrGlsi02 84099674 84108046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3760 1 914 MAP Kinase Kinase Kinase AT1G08720 58.085 0.0 972
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Glsi02g3760 PK_Tyr_Ser-Thr 1.7e-63 CL0016