Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3749 ATGGGGTGTGTAATTAGTCGAGAAGTATCATCGGGAATAATCTCCGAGGTGAAAGAGGAGAAGAGTGTGAGTGCTGAATCCAACAGGAAGGTAGATGAAGTGTCGGCGAGGAACGTGGTAGAGGCTCCGAACGGTGGGAACCAGAAGGAAGAGAATGGTGGTGATGATGGGATCCAGGTGGTCCAACGGCCAAGGGGCGAGAGAAGAAGATCAAAACCAAACCCAAGGCTAAGCAATCCGCCCAAACATTTGAGGGGGGAGCAAGTAGCAGCTGGGTGGCCACCCTGGCTTACGGCAGTGTGTGGGGAGGCACTTAGTGGGTGGATTCCGCGAAAAGCTGACACTTTTGAGAAAATTGATAAGATTGGTCAAGGGACGTATAGTAATGTGTACAAGGCGAAAGACATATTGACGGGTAAAATAGTTGCACTAAAGAAGGTTCGATTTGACAATTTGGAGCCTGAGAGTGTAAAATTTATGGCTAGAGAGATTCTTATTCTGCGAAGACTGGATCATCCCAATGTTGTAAAGTTGGAAGGTTTAGTTACATCAAGGATGTCATGTAGTTTGTATCTGGTATTCGATTACATGGTGCATGATTTAGCTGGACTTGCTGCAAGCCCAGGAATCAAGTTCACAGAGCCTCAGGTCAAATGTTACATGCATCAACTACTATCTGGACTTGAGCACTGTCACAAACGGCACATACTTCACCGTGATATTAAAGGATCGAATCTTCTCATTGACAATGGAGGAGTACTCAGAATTGCTGACTTTGGACTGGCCTCTTTCTTTGATCCAAACCACAAGCACCCCATGACTAGTCGTGTGGTTACTCTATGGTACCGGCCTCCTGAGTTGCTTCTTGGTGCCACAGACTATGGTGTGGGCGTGGATCTCTGGAGTGCAGGTTGCATTTTAGGAGAGTTATTGGCTGGGAAGCCAATAATGCCAGGTCGTACAGAGGTAGAGCAACTGCATAAGATATACAAACTATGTGGTTCACCTTCCGATGAGTATTGGAAGAAGTCAAAGTTGCCAAATGCTACCTTGTTTAAACCCCGAGAACCATACAAGAGACGCATAAGTGAAACATTTAAAGACTTTCCACCTTCTGCACTGCCCCTTATTGATGCTCTTCTGGCTATTGATCCGGCAGAACGGAAGACTGCCTCCGACGCTTTAAAAAGTGAGTTCTTCACGACAGAACCTTATGCTTGTGATCCTTCTAGTCTTCCAAAATATCCCCCAAGCAAGGAAATGGATGCTAAACGACGGGATGATGAAGCAAGGAGACTAAGAGCTGCAAGCAAAGGTCAGGTTGATGGTGCAAAGAAACCACGAACACGCGATCGTGTTGTTAAAGCTATTCCTGCCCCCGAAGCCAATGCAGAGCTTCAATCTAATATTGATAGAAGGCGTCTAATCAGTCATGCAAATGCAAAGAGCAAGAGCGAAAAGTTTCCTCCGCCACATCAAGATGGACAACTTGGCTTTCCTTTGGGATCTTCGCATCATATTGATCCAGACATTGTTCCTTCAGATGTGTCTTTCAGTACAACTTCATTTACCTATTCAAAGGAACCATACCAAGCTTGGTCAGGTCCCATAGGTAATACTGCTGGCATTGGTGCACCAAAGAAGAAGAAACACGAAGCAGGTGACTTATCAAAACCACAGACGGTCTCCTTCATGGGTAAGATTAAAGGAAAGAAAATCGTAGTCTAG 1728 0.4554 MGCVISREVSSGIISEVKEEKSVSAESNRKVDEVSARNVVEAPNGGNQKEENGGDDGIQVVQRPRGERRRSKPNPRLSNPPKHLRGEQVAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDILTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFDYMVHDLAGLAASPGIKFTEPQVKCYMHQLLSGLEHCHKRHILHRDIKGSNLLIDNGGVLRIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRRISETFKDFPPSALPLIDALLAIDPAERKTASDALKSEFFTTEPYACDPSSLPKYPPSKEMDAKRRDDEARRLRAASKGQVDGAKKPRTRDRVVKAIPAPEANAELQSNIDRRRLISHANAKSKSEKFPPPHQDGQLGFPLGSSHHIDPDIVPSDVSFSTTSFTYSKEPYQAWSGPIGNTAGIGAPKKKKHEAGDLSKPQTVSFMGKIKGKKIVV 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3749 575 ProSiteProfiles Protein kinase domain profile. 116 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g3749 575 PANTHER CELL DIVISION PROTEIN KINASE 114 404 - -
Glsi02g3749 575 MobiDBLite consensus disorder prediction 17 36 - -
Glsi02g3749 575 SMART serkin_6 116 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g3749 575 FunFam probable serine/threonine-protein kinase At1g54610 103 198 - -
Glsi02g3749 575 CDD STKc_CDK9_like 116 400 - -
Glsi02g3749 575 MobiDBLite consensus disorder prediction 418 450 - -
Glsi02g3749 575 MobiDBLite consensus disorder prediction 536 558 - -
Glsi02g3749 575 MobiDBLite consensus disorder prediction 408 450 - -
Glsi02g3749 575 Gene3D Phosphorylase Kinase; domain 1 103 198 - -
Glsi02g3749 575 FunFam probable serine/threonine-protein kinase At1g54610 199 440 - -
Glsi02g3749 575 Gene3D Transferase(Phosphotransferase) domain 1 199 439 - -
Glsi02g3749 575 ProSitePatterns Protein kinases ATP-binding region signature. 122 145 IPR017441 GO:0005524
Glsi02g3749 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Glsi02g3749 575 Pfam Protein kinase domain 116 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g3749 575 MobiDBLite consensus disorder prediction 17 88 - -
Glsi02g3749 575 SUPERFAMILY Protein kinase-like (PK-like) 111 407 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3749 Glsi-ChrGlsi02 84040225 84044535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3749 108 440 Core Cell Cycle Gene Families AT5G10270 52.149 7.12e-122 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Glsi02g3749 Pkinase 3.2e-66 CL0016