Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3737 ATGAATGACACACTTACATGCCTACGACCAATTAAATCAATCATCCTCCCAGTTGCCACTCCACCCGCCATTGATACTATCGTCGATATTGAGCCAAAAACTGAGTACTGCAAGCTAGATTCTCAGTATCAGTATAGGAGGGTTTTCAACTCAAAACCAATTAGTAAATGGCTGGAGTACAAAACCTCTGCCACAGAGAGGTCCAGTTCAGCTATGATTCCATACTCAGAAGTAGAAGTCGCTGCTGAGGTTTTACCACCTGTCCAGAGCCCAGCTGAGCTGAGCAGCGGCTCTTACGGCCTCTTGGACAATAAAAAGAGTTCTGCTAACAAACCGAAGAAGGTCCCAGTGGATGATGCTTTTAATGTTAAACGTAAAAAACGAAGCTTTCTGTTTTTTCCCTCTGCTTCTGCCCAAGACTTGAGACATTTAGACTTGGAGAAAGAGAAAGAAGATGTTTCATCTCCTAGAGGGGTCATAGAGGCCTGCATTCGAGGCTTTGATGACGCCTCGCAAACACTTGAAACGGATACCCGTTGTTCAAAGTCAAGGGCTATACTTCATTGGAGCAAATTTTTCAAACAATGGAAAAAAAGATCTTTTAAGCGCCTAGCGTCCTTCCCTCCTATTGGTGTGCCAAAGATACCAACAGGGAAAAGCAGAAGCACTAGAGAAAATCCTGTTCTGAGTAATCTATACAACTTCAGGTCTTCATTGGTGAATTTCAGCCTCTCTCAACTCAGAAATGCAACCAACAATTTTAGTAATGAAAATATTATTGGAAGAGGTGGGTTTTCTGAAGTTTACAAGGGTACTCTCCAAGATGGGAGACTAATAGCTGTAAAGCGACTGACTAAAGGGAATTCAGATGAGAGGACAGCAGGATTTCTATCTGAGCTAGGCATTATTGCTCATGTTGAACATCCTAATACTGCAAAGCTTATTGGATGCGGTATAGAAGGCGGAATGCACCTTGTCTTTCAATTATCGCCACTCGGAAGCTTAGGATCTCTTCTTCACGGTTCAAATAATAACAAACTAGATTGGAGTAAAAGGTATAAGATTGCTCTGGGCATAGCCGATGGTCTCCTCTATCTTCACGAGAGTTGTCACAGGCGAATCATTCATAGAGATATTAAGGCAGAGAATATTCTGCTCACTGAAAGTTTTGAGCCACAGATTTGTGATTTTGGGCTGGCAAAGTGGTTACCCAAACAATGGACTCACCATAATGTATCAAAATTTGAAGGCACATTTGGGTATTTTGCACCTGAATATTTCATGCATGGCATAGTAGACGAGAAAACTGATGTTTATTCCTTCGGGGTTCTACTGTTGGAGCTTATAACCGGGCGTCGAGCTTTGGATAAATCGCAGCAGAGTGTTGTAGTATGGGCAAAGCCTTTGCTTGATAATAATAATGTGAAGGAGCTCGTCGATCCTTCTCTTGGTGATGATTATGAGCCGCAACAGATGGATCGGGTTGTTCTGACTGCATCTCTGTGTGTCGAGCAGTCTCCTGTCTTGCGTCCTTGCATGAGTCAGGCTGCTGTACTGCTAAGAGGGGACGAGTGTGTGGTGCAATCTACAAAAGAATGCAGGAGGCGGGCTTTCCTAAGAACATACTCAGAAGAGCTATTGGATGTACAAGAATACAACTCAACCAAATATCTAAGTGATCTCAAGCAACACAAGCAGATTGCCTTGGAATCTTGA 1716 0.4295 MNDTLTCLRPIKSIILPVATPPAIDTIVDIEPKTEYCKLDSQYQYRRVFNSKPISKWLEYKTSATERSSSAMIPYSEVEVAAEVLPPVQSPAELSSGSYGLLDNKKSSANKPKKVPVDDAFNVKRKKRSFLFFPSASAQDLRHLDLEKEKEDVSSPRGVIEACIRGFDDASQTLETDTRCSKSRAILHWSKFFKQWKKRSFKRLASFPPIGVPKIPTGKSRSTRENPVLSNLYNFRSSLVNFSLSQLRNATNNFSNENIIGRGGFSEVYKGTLQDGRLIAVKRLTKGNSDERTAGFLSELGIIAHVEHPNTAKLIGCGIEGGMHLVFQLSPLGSLGSLLHGSNNNKLDWSKRYKIALGIADGLLYLHESCHRRIIHRDIKAENILLTESFEPQICDFGLAKWLPKQWTHHNVSKFEGTFGYFAPEYFMHGIVDEKTDVYSFGVLLLELITGRRALDKSQQSVVVWAKPLLDNNNVKELVDPSLGDDYEPQQMDRVVLTASLCVEQSPVLRPCMSQAAVLLRGDECVVQSTKECRRRAFLRTYSEELLDVQEYNSTKYLSDLKQHKQIALES 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3737 571 Gene3D Phosphorylase Kinase; domain 1 216 328 - -
Glsi02g3737 571 ProSiteProfiles Protein kinase domain profile. 254 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g3737 571 PANTHER OS08G0249100 PROTEIN 127 564 IPR046958 -
Glsi02g3737 571 SUPERFAMILY Protein kinase-like (PK-like) 233 518 IPR011009 -
Glsi02g3737 571 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 230 329 - -
Glsi02g3737 571 SMART serkin_6 254 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g3737 571 ProSitePatterns Serine/Threonine protein kinases active-site signature. 374 386 IPR008271 GO:0004672|GO:0006468
Glsi02g3737 571 Gene3D Transferase(Phosphotransferase) domain 1 331 537 - -
Glsi02g3737 571 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 331 534 - -
Glsi02g3737 571 ProSitePatterns Protein kinases ATP-binding region signature. 260 282 IPR017441 GO:0005524
Glsi02g3737 571 Pfam Protein tyrosine and serine/threonine kinase 257 514 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3737 Glsi-ChrGlsi02 83958410 83963433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3737 239 526 Receptor kinase-like Gene Family AT1G53420 43.729 6.89e-71 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Glsi02g3737 PK_Tyr_Ser-Thr 6.7e-42 CL0016