Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3725 ATGGTACTAGAAGCAGTGGTATATCCACAAGACCCATTTGGTTGTGGCGGCAAAGACCTCTACAACCTGTTAGCAGGCGCACCCAACTGGGGCTATGACGACTTCAACATTGAAAAAGAGGAAGAGCATGCCTCTATTGATTTTCTCCAGAACCAAACACAAAGTTATCCTTATGGAATTGGAGATTGGGATTGTTCGCTCCCATCTATGTTACCCCACTTGAATGAAGTTCATCTTTCCAACCCATCCTCAGAGATCAACAATGTTGCCAGCAATACAACCCCAAGTGAACCCCACAACTTGGATACCTCAACCTCAGTGCCTTCTCGTCCTAAGAGGCGCAGAGCCAAAAGCCGAAAGAATAAGGAAGATATTGAGAACCAGAGAATGACTCACATTGCTGTGGAGCGCAACCGAAGAAAACAAATGAACGAGTATCTCTCTGTTCTTCGGTCTTTAATGCCAGACTCCTACGTCCAAAGGGGCGACCAAGCTTCTATAATTGGAGGTGCTATTAATTTTGTTAAGGAGCTTGAGCAAAGGCTGCAATTTCTTGGTGCTCAGAAAGAAACAGGGGGGAAATCTAATCCCGGTGCGAATTTGCCTTTTTCTGAGTTCTTCACATTTCCTCAGTATTCAACAAGTGGTAACAGCTGCGAGAATTCTTTGGCCATGGGAGATCAAGTGGGTGAGGTTAAGTCTGGTATTGCTGACATAGAAGTGACAATGGTGGAGAGCCATGCAAATCTCAAAATAAGATCGAAGAAGCGGCCAAAGCAGCTCTTGAAGGTGGTCTCTGGTTTGCATACCATGCGTCTCACAATCTTGCACCTAAACGTCACAACCACTGGTGAAATTGTCCTCTATTCTCTCAGCGTTAAGGTAGAAGATGATTGCAATCTAGGTTCGGTGGACGAGATAGCAGCAGCTTTATTTCAAATGCTGGACAGGATTCATCAGGAGTCAATGGGAAAGCTGCAGAGAGCAGCTTTAGAAGGGTAA 1002 0.4521 MVLEAVVYPQDPFGCGGKDLYNLLAGAPNWGYDDFNIEKEEEHASIDFLQNQTQSYPYGIGDWDCSLPSMLPHLNEVHLSNPSSEINNVASNTTPSEPHNLDTSTSVPSRPKRRRAKSRKNKEDIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQFLGAQKETGGKSNPGANLPFSEFFTFPQYSTSGNSCENSLAMGDQVGEVKSGIADIEVTMVESHANLKIRSKKRPKQLLKVVSGLHTMRLTILHLNVTTTGEIVLYSLSVKVEDDCNLGSVDEIAAALFQMLDRIHQESMGKLQRAALEG 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3725 333 SMART finulus 133 184 IPR011598 GO:0046983
Glsi02g3725 333 MobiDBLite consensus disorder prediction 83 125 - -
Glsi02g3725 333 Gene3D - 112 193 IPR036638 GO:0046983
Glsi02g3725 333 MobiDBLite consensus disorder prediction 83 107 - -
Glsi02g3725 333 Pfam Helix-loop-helix DNA-binding domain 128 179 IPR011598 GO:0046983
Glsi02g3725 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 178 IPR011598 GO:0046983
Glsi02g3725 333 PANTHER MAX DIMERIZATION, MAD 70 322 - -
Glsi02g3725 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 193 IPR036638 GO:0046983
Glsi02g3725 333 CDD bHLH_AtFAMA_like 130 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3725 Glsi-ChrGlsi02 83901088 83902982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3725 1 295 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 44.582 9.12e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi02g3725 HLH 4.6e-10 No_clan