LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi02g3724	ATGACCAACGCTCTGACATCACTACAGACCTCAGAGAAAAGACCAGCCACACCCTTTTTTAAAAAAACTCACTCCATTTATAAACTCCCCTCTTCACTTACTCTCTTCTCCTGTGCCTTTCCCTCCTCCCTTCATTTCGTGAGAAGGGTCAACCCCCCAAGCAACGAGAAATTTGTTTTTTTCTTGTGTAATTACACGATGAGCAAGCAATTCTACATCCATCGGTTTTCGAGCTCTTCCACTTATGGAATCATTCCGCTTTGCTTCCTCATCGTCATCCTCTCCCCTCTCGTCGGAGCCCAACCCGGAACCAAGGATGACCAAACCGATCAGTCCTACTACAACAGCTTCACCCCCTCCATGGCCATCATCATCGTCATATTAATTGCCGCCCTTTTCCTCATGGGCTTCTTTTCCATCTACATCCGCCACTGTGCCGATTCACCCTCCGGCAGCGTTCGCCCCCTGGGTGCTGCGGCTTCCAGGCGCGCCCCTCGCGGCCTTGACCCGCTCGTCATCGACACCTTTCCTACTCTTGAATACTCGGTGGTTAAGATTCACAAGATAGGTAAAGGGGCACTCGAATGCGCCGTCTGCTTAAGCGAGTTCGAGGACACCGAAACGCTGCGTTTGCTTCCCAAGTGCGATCACGTCTTCCACCCGGAATGTATTGACGAGTGGTTGGCTTCTCATACCACCTGCCCCGTTTGCCGAGCCAACCTTGTTCCCCAACCGGGCGATTCCATCCACGCAGTTCCAACTATCAACACCGAATCAGATATCGAAGCACAAAACGATGCCGTGGAACACGAATCCGATCAACACAATGCCGACGTTGACCGAGAACCAGCCGAACCTGAAGTTTTATGCCTCAACCAGACGTTGAAACGAAACCGTACGAGTACGAGAGGGTCTCGATCGGGTCGGGCACGAAGGTTTCCCCGGTCACACTCGACCGGGCACTCGTTGGTCCAGCCGGGTGAAAACACGGAACGGTTCACTTTGAGACTGCCAGTGGAAGTAAGGAACCAGATACTAAACCGGCAATTGCATCGGGCAACAAGCATGGTAGTCTTGCCTAGAGAAAGCAGTTCTAGGCGGGGCTATCGCCCCGGCGGTGAGGGCAGCAGCAGAGGGAGGTTTTCCAGGCGGCTGGACCGGGGGATTAAATCAGACCGATGGGTTTTCACGATGGCGCCGCCGTTCTTAGTGAGGGCATCGTCGATTAGGTCCCCGAAGATGGTCAGTAACGCCGGTGAAGGGACCTCCACTCAACCCATCACGCCGCCGACGGCCGATTCTGGCCGGCCTCCGGTTTAA	1320	0.5402	MTNALTSLQTSEKRPATPFFKKTHSIYKLPSSLTLFSCAFPSSLHFVRRVNPPSNEKFVFFLCNYTMSKQFYIHRFSSSSTYGIIPLCFLIVILSPLVGAQPGTKDDQTDQSYYNSFTPSMAIIIVILIAALFLMGFFSIYIRHCADSPSGSVRPLGAAASRRAPRGLDPLVIDTFPTLEYSVVKIHKIGKGALECAVCLSEFEDTETLRLLPKCDHVFHPECIDEWLASHTTCPVCRANLVPQPGDSIHAVPTINTESDIEAQNDAVEHESDQHNADVDREPAEPEVLCLNQTLKRNRTSTRGSRSGRARRFPRSHSTGHSLVQPGENTERFTLRLPVEVRNQILNRQLHRATSMVVLPRESSSRRGYRPGGEGSSRGRFSRRLDRGIKSDRWVFTMAPPFLVRASSIRSPKMVSNAGEGTSTQPITPPTADSGRPPV	439

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi02g3724	439	PANTHER	RING FINGER DOMAIN-CONTAINING	104	251	-	-
	Glsi02g3724	439	ProSiteProfiles	Zinc finger RING-type profile.	196	238	IPR001841	-
	Glsi02g3724	439	Pfam	Ring finger domain	195	238	IPR001841	-
	Glsi02g3724	439	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	158	244	IPR013083	-
	Glsi02g3724	439	FunFam	E3 ubiquitin-protein ligase ATL6	157	244	-	-
	Glsi02g3724	439	MobiDBLite	consensus disorder prediction	414	439	-	-
	Glsi02g3724	439	MobiDBLite	consensus disorder prediction	359	384	-	-
	Glsi02g3724	439	SUPERFAMILY	RING/U-box	191	245	-	-
	Glsi02g3724	439	CDD	RING-H2_EL5-like	195	238	-	-
	Glsi02g3724	439	SMART	ring_2	196	237	IPR001841	-
	Glsi02g3724	439	MobiDBLite	consensus disorder prediction	302	316	-	-
	Glsi02g3724	439	MobiDBLite	consensus disorder prediction	414	430	-	-
	Glsi02g3724	439	MobiDBLite	consensus disorder prediction	298	329	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi02g3724	Glsi-ChrGlsi02	83873790	83875109	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi02g3724	83	406	Rapid Response to Elicitors	AT3G05200	48.802	4.20e-91	280