Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3715 ATGGATCCACTTGGAATGGCAATATTGTTGGAGAAGGAAGAATTCGACAGGTACATGGGCATCACCTGTTGTAGAAGAATGGATCACCAAGGGCATAGCCAGAACCCATCTATGGGGGTGGTTGGTAGTGGAGCTCAATTGCCTTATGGTTCTAATCCATACCAGCCAACCCAAATAACTGGGGCATCTGGTTCGGTTGTTACATCAGTTGGGACCATTCCATCTAGTGGTCATCCTGCAGGAGCTCAGCATCAACTTGCTTATCAGCATATTCATCAGCAACAGCAGCAGCAACTTCAGCAACAACTCCAATCCTTTTGGGCAAATCAGTACCAAGAAATTGAGAAGGTAACTGATTTCAAGAACCACAGCCTTCCGTTGGCAAGGATTAAGAAGATTATGAAGGCTGATGAGGATGTTAGAATGATATCAGCTGAGGCACCAGTTATATTTGCAAGGGCTTGTGAAATGTTCATATTAGAGTTAACCTTGCGTTCTTGGAATCACACTGAAGAAAACAAAAGGAGAACACTCCAAAAAAATGATATTGCAGCAGCAATCACAAGGACTGACATCTTTGATTTCTTGGTTGATATTGTGCCCCGGGAGGACTTGAAAGATGAAGTGCTTGCATCAATTCCAAGAGGAACTATGCCAGTTGCGGGGCCTGCTGATGCACTTCCTTATTGCTATATGCCACCACAGCATGCACCTCAAGTTGGCACTGCTGGTGTCATAATGGGTAAGCCTGTGATGGACCCAACTATATATGCCCAACAATCTCATTCCTACATGGCACAACAAATGTGGCCACAGGCACCAGAGCAACAACAACCATCTCCAGATCATTAG 852 0.4484 MDPLGMAILLEKEEFDRYMGITCCRRMDHQGHSQNPSMGVVGSGAQLPYGSNPYQPTQITGASGSVVTSVGTIPSSGHPAGAQHQLAYQHIHQQQQQQLQQQLQSFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADALPYCYMPPQHAPQVGTAGVIMGKPVMDPTIYAQQSHSYMAQQMWPQAPEQQQPSPDH 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3715 283 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 85 249 - -
Glsi02g3715 283 Gene3D Histone, subunit A 86 202 IPR009072 GO:0046982
Glsi02g3715 283 SUPERFAMILY Histone-fold 95 196 IPR009072 GO:0046982
Glsi02g3715 283 FunFam Nuclear transcription factor Y subunit gamma 89 202 - -
Glsi02g3715 283 Pfam Core histone H2A/H2B/H3/H4 90 187 IPR007125 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3715 Glsi-ChrGlsi02 83827385 83830246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3715 27 270 CCAAT-HAP5 Transcription Factor Family AT1G08970 61.224 1.62e-87 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Glsi02g3715 CBFD_NFYB_HMF 6.7e-18 CL0012