Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3697 ATGAATTGCTTCAATTGCCTTGAAAACAGAGGGGACATGACAGCGTACTTGTATGGAATGGTTCTTCCTGAATCAAGAGGAGATCTTTTACCTGATCCACGGTTTGATGCCATCAACATTATAGCTCTTGGTTTTCAAGATGATAGTGACGCTCTTGTTGAAGTTCTTGTTCTTTTGCATAGTAAACCTGAACCTTGCCAAAGAAGTTTAGATGGCCTATCAAGCTGCAAAGTGTTGGTCTTCACTGATGAAAAGTACTTGCTAAAAAAATTAATCGAGATTGTGTCTTCATCTGACCCAGATATTCTGATGGGTTGGGATATTCAAGGGGGTTCTCTTGGTTTTTTAGCAGAAAGGGCTTCACATCTTGGTTTAGGATTATTCAATAGTTTATCACGCACTCCATCTAAGTCCTCGATTGCTTCTGAAGATTTTGGAACTTCTGAGAAAGGTATATTGGAACATGTCATTCCTGATACATCTAATGCAGATTCTTGTGTCCAAGAAAGTTCAATAATTGAAGATGAATGGGGACGAACACATGCAAGTGGAGTTCATGTTGGTGGCAGAATTGTCCTTAATGTATGGCGACTGATCCGTGGAGAAGTTAAGCTTAATTTATACTCAGTTGAAGCTGTAGCTGAAGCTGTATTGAGGCGGAAAGTTCCTTTAATTCACTATAAGGTGCTGACAAAATGGTTTTCAAGTGGTCCTGGACGAGCAAGATATAAGTGTATTAAATATGTTATTGAGAGAGCAAAGCTGAATCTTGAGATATTAAGCCAACTCGATTTGGTAAATCGAACCTCTGAACTTGCTCGTATCTTTGGAATAGATTTTTTTTCTGTTCTCTCCAGAGGTTCACAATATCGTGTTGAATCTATGTTTCTGAGGTTGGCACATACACAAAACTATCTTGCTATCTCTCCCGGAAACCAACAGGTTGCTTCTCAACCTGCCATGGAGTGCCTGCCCCTTGTAATGGAACCAGAGTCAGGATTTTATTCAGACCCTGTTGTTGTATTTGACTTTCAGTCTTTATATCCATCCATGATAATTGCATACAACCTTTGCTTCTGTACATGCCTTGGCAAAGTTATGGCATCAAAGGCAAACACGCTTGGGGTTAGTTTGTTTTCTCCAGAGCACCATGTTCTGCAGGATTTAAAAGATCAGATCTTGCTCACTCCTAATGGTGTTATGTTTGTTCCTTCCAAGGTGGTTCGTAGAGGTATACTGCCCCGCTTATTGGAAGAAATTTTATCGACTAGGATAATGGTAAAACAAGCTATGAAAAAGTTGGATCCTTCACAACAAGTTCTTCATCGGATATTTAATGCAAGACAGCTTGCTTTGAAGCTTATATCAAATGTAACATATGGCTACACTGCTGCTGGATTTAGTGGTCGCATGCCTTGTGCGGAGCTTGCAGACAGTATTGTTCAATGTGGCCGTTGTACACTGGAAAAGGCTATATCATTTGTAAATCTACATGAAAAGTGGAATGCTGAAGTTATTTATGGAGATACTGATAGGTCATTCAATGACAAGAAGATGGCAAAGATATCAGCTAGTGGTATCTGCCCTGATTTGGCCATAGTACCAGGGGTCATGCTTCGTTGGGGGTTCAATTTCTTGTCTCTCTCCTTCCCGAGCAAGTCCCCCATGACCACCCACTGGGACCTCTCCGAGACCCAAAAAAAACGCTCAGTTTTAAAGGCTATTCATGCTAGGAAACACCTTCCCAATCAAATTAGTTACAGAATAGAAGATATTGTGGAAAATATCTCCTCGGCCTCAATTGCCCTTTACCTATCATTGCCTCTGGTTTGTTCCTTTGCCTTCTTCTCCATCTCCCAACCCCTAAACCCTTTACAAGTTGTTGCCTCTGGAGGGAAATTAGACTTAGACTCTGTGGAATCTGGAAGTCTTGTCTCCCTAGCTACAATAGCTAACCAGTATCTACTCCTCTGCCCTTCTCTTTCTTCCTTGCGTTCGATCAAGGGTCCTTGCACTCTATTCTCTCAAATTGTCCTTACTTTATCAAGAAATGATCAAGTAAAGTGGAGGTCTTTCTGCAGCATGTTTGTGCTCCTTAAAGGACGCACTATTAAAGAAAGCTTCCAAATTGGGCGAGAGATTGCTTCTACTATCACTGCTATGAATCCTAGTCCCATCACCCTGAAGCTGGAGAAAGTTTATAATCCTTGTTTCCTCCTTACTAAGAAGCGATATGTTGGCTACAGTTACGAAAGCCCTGATCAAATTGAGCCTGTTTTTGATGCCAAAGGTATTGAGACAGTTCGCAGGGACACGTGTGGTGCAGTTGTGAAGATAATGGAACAGTCTTTGAGGCTCTTTTTTGAGCATCTGGATCTATTGGAGGTGAAAACTTATTTACATCGTCAGTGGAAGAGAATTCTTTCAGGTCGAATCTCCCTTAAAGATTTTGTCTTTGCTAAGGAGGTTCGCTTGGGTAGCTACAGTGCAAGAATGTCATCACTACCTCCTGCTGCAATTGTTGCCACTAAGGCAATGAGGGTTGATCCTAGGGCAGAACCACGTTATGCTGAGAGAGTACCTTATGTTGTTATCCATGGAGAGCCTGGTGCCCGCTTGGTTGATATGGTTGTGGATCCATCAGAAGTTCTGGCAATTGATTCCCCATTCAGAATAAACGATTTATATTACATTAATAAGCAAATAATACCTGCTTTGCAGCGGGTATTTGGGCTTGTTGGTGCTGACCTGAACCGGTGGTTTGCAGAGATGCCCCGTCCTGTGAAGGAAGCCAATACAAAGTTTTCCTTTGCTCCAAATTTACAACGAACAAGAATCGAATTTTACTATCTCTCAAAACATTGTATACTGTGTGGTGGGTTGGTACAGGGATCCGTCCATATCTGTAATCAATGTTCTGAAGATGGAGTGGCTGCTGCAACAGCTGTGGTTAGTAAAACTTCGAAGTTGGAGCAAGAGATGCAACATCTTGTTGCTATATGTAACCATTGTGGAGGTGGAGACGAGCTTCTGGGAAGTGGTGTAAAGTGCACGTCAATTTCATGCTCGGTGTTTTATGAGAGACGGAAAGTTCAGAAAGAACTACTAGCTATGAACCATGTTGCTGCAGGTGAAGGATTCTATCCAAGATGCATGGTCGAGTGGTTTTGA 3171 0.4178 MNCFNCLENRGDMTAYLYGMVLPESRGDLLPDPRFDAINIIALGFQDDSDALVEVLVLLHSKPEPCQRSLDGLSSCKVLVFTDEKYLLKKLIEIVSSSDPDILMGWDIQGGSLGFLAERASHLGLGLFNSLSRTPSKSSIASEDFGTSEKGILEHVIPDTSNADSCVQESSIIEDEWGRTHASGVHVGGRIVLNVWRLIRGEVKLNLYSVEAVAEAVLRRKVPLIHYKVLTKWFSSGPGRARYKCIKYVIERAKLNLEILSQLDLVNRTSELARIFGIDFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVFDFQSLYPSMIIAYNLCFCTCLGKVMASKANTLGVSLFSPEHHVLQDLKDQILLTPNGVMFVPSKVVRRGILPRLLEEILSTRIMVKQAMKKLDPSQQVLHRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRCTLEKAISFVNLHEKWNAEVIYGDTDRSFNDKKMAKISASGICPDLAIVPGVMLRWGFNFLSLSFPSKSPMTTHWDLSETQKKRSVLKAIHARKHLPNQISYRIEDIVENISSASIALYLSLPLVCSFAFFSISQPLNPLQVVASGGKLDLDSVESGSLVSLATIANQYLLLCPSLSSLRSIKGPCTLFSQIVLTLSRNDQVKWRSFCSMFVLLKGRTIKESFQIGREIASTITAMNPSPITLKLEKVYNPCFLLTKKRYVGYSYESPDQIEPVFDAKGIETVRRDTCGAVVKIMEQSLRLFFEHLDLLEVKTYLHRQWKRILSGRISLKDFVFAKEVRLGSYSARMSSLPPAAIVATKAMRVDPRAEPRYAERVPYVVIHGEPGARLVDMVVDPSEVLAIDSPFRINDLYYINKQIIPALQRVFGLVGADLNRWFAEMPRPVKEANTKFSFAPNLQRTRIEFYYLSKHCILCGGLVQGSVHICNQCSEDGVAAATAVVSKTSKLEQEMQHLVAICNHCGGGDELLGSGVKCTSISCSVFYERRKVQKELLAMNHVAAGEGFYPRCMVEWF 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3697 1056 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 21 514 IPR030559 GO:0006281|GO:0016035|GO:0019985
Glsi02g3697 1056 FunFam DNA polymerase zeta 407 466 - -
Glsi02g3697 1056 SUPERFAMILY DNA/RNA polymerases 287 511 IPR043502 -
Glsi02g3697 1056 Gene3D - 49 317 IPR036397 GO:0003676
Glsi02g3697 1056 Gene3D Palm domain of DNA polymerase 318 526 IPR023211 -
Glsi02g3697 1056 Gene3D Helix hairpin bin 407 463 - -
Glsi02g3697 1056 Gene3D - 764 930 IPR042087 -
Glsi02g3697 1056 Pfam C4-type zinc-finger of DNA polymerase delta 955 1028 IPR025687 -
Glsi02g3697 1056 CDD POLBc_zeta 287 918 - -
Glsi02g3697 1056 FunFam DNA polymerase 764 932 - -
Glsi02g3697 1056 Pfam DNA polymerase family B 694 910 IPR006134 GO:0000166|GO:0003677
Glsi02g3697 1056 Pfam DNA polymerase family B 280 519 IPR006134 GO:0000166|GO:0003677
Glsi02g3697 1056 FunFam DNA polymerase 21 322 - -
Glsi02g3697 1056 Pfam DNA polymerase family B, exonuclease domain 74 148 IPR006133 -
Glsi02g3697 1056 PRINTS DNA-directed DNA-polymerase family B signature 449 461 IPR006172 GO:0000166|GO:0003676|GO:0003887
Glsi02g3697 1056 PRINTS DNA-directed DNA-polymerase family B signature 505 513 IPR006172 GO:0000166|GO:0003676|GO:0003887
Glsi02g3697 1056 PRINTS DNA-directed DNA-polymerase family B signature 339 352 IPR006172 GO:0000166|GO:0003676|GO:0003887
Glsi02g3697 1056 SUPERFAMILY DNA/RNA polymerases 694 922 IPR043502 -
Glsi02g3697 1056 SMART polmehr3 8 519 IPR006172 GO:0000166|GO:0003676|GO:0003887
Glsi02g3697 1056 SUPERFAMILY Ribonuclease H-like 26 302 IPR012337 -
Glsi02g3697 1056 CDD DNA_polB_zeta_exo 21 261 - -
Glsi02g3697 1056 Gene3D Palm domain of DNA polymerase 693 753 IPR023211 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3697 Glsi-ChrGlsi02 83673120 83685345 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3697 50 511 Core DNA Replication Machinery Family AT5G63960 29.697 1.74e-49 189