LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi02g3692	ATGGACAATGAGCAAGATAGGTTGTTGCCGATTGCAAACGTGGGACGAATCATGAAACAAATTCTTCCGCCAAGTGCAAAGATCTCCAAAGAAGGGAAACAAGTAATGCAAGAATGTGCTACAGAGTTCATAAGTTTTGTGACCGGAGAGGCATCTGACAAGTGTCACAAGGAGAATCGCAAGACCATCAATGGGGATGACATCTGTTGGGCTCTAAGTGCGTTAGGGTTTGATAACTATGCTGAAGCCATTGCAAGGTACTTGCATAAATACAGGCTGGCTGAACGGCAGAAAGCCAAGCAAAACAAAGGCGATAACCCCCATGAAGACTCAGCAACAAAAACTGATGAGCGTAGGGTTATTGAGAAGGCTGAGAACTCTCCTGCAAATCAATCTTGA	399	0.4461	MDNEQDRLLPIANVGRIMKQILPPSAKISKEGKQVMQECATEFISFVTGEASDKCHKENRKTINGDDICWALSALGFDNYAEAIARYLHKYRLAERQKAKQNKGDNPHEDSATKTDERRVIEKAENSPANQS	132

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi02g3692	132	ProSitePatterns	NF-YB/HAP3 subunit signature.	39	55	IPR003956	GO:0005634\|GO:0006355\|GO:0043565
	Glsi02g3692	132	Pfam	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	8	72	IPR003958	-
	Glsi02g3692	132	MobiDBLite	consensus disorder prediction	96	124	-	-
	Glsi02g3692	132	FunFam	Nuclear transcription factor Y subunit B-6	1	115	-	-
	Glsi02g3692	132	SUPERFAMILY	Histone-fold	5	117	IPR009072	GO:0046982
	Glsi02g3692	132	PRINTS	CCAAT-binding transcription factor subunit A signature	74	92	-	-
	Glsi02g3692	132	PRINTS	CCAAT-binding transcription factor subunit A signature	36	54	-	-
	Glsi02g3692	132	PRINTS	CCAAT-binding transcription factor subunit A signature	55	73	-	-
	Glsi02g3692	132	PANTHER	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	2	126	IPR027113	GO:0001228\|GO:0006355\|GO:0016602
	Glsi02g3692	132	Gene3D	Histone, subunit A	1	132	IPR009072	GO:0046982

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi02g3692	Glsi-ChrGlsi02	83616828	83617226	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi02g3692	4	129	CCAAT-HAP3 Transcription Factor Family	AT1G09030	62.500	4.89e-59	177

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YB	Glsi02g3692		CBFD_NFYB_HMF	5.9e-25	CL0012

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