Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3692 ATGGACAATGAGCAAGATAGGTTGTTGCCGATTGCAAACGTGGGACGAATCATGAAACAAATTCTTCCGCCAAGTGCAAAGATCTCCAAAGAAGGGAAACAAGTAATGCAAGAATGTGCTACAGAGTTCATAAGTTTTGTGACCGGAGAGGCATCTGACAAGTGTCACAAGGAGAATCGCAAGACCATCAATGGGGATGACATCTGTTGGGCTCTAAGTGCGTTAGGGTTTGATAACTATGCTGAAGCCATTGCAAGGTACTTGCATAAATACAGGCTGGCTGAACGGCAGAAAGCCAAGCAAAACAAAGGCGATAACCCCCATGAAGACTCAGCAACAAAAACTGATGAGCGTAGGGTTATTGAGAAGGCTGAGAACTCTCCTGCAAATCAATCTTGA 399 0.4461 MDNEQDRLLPIANVGRIMKQILPPSAKISKEGKQVMQECATEFISFVTGEASDKCHKENRKTINGDDICWALSALGFDNYAEAIARYLHKYRLAERQKAKQNKGDNPHEDSATKTDERRVIEKAENSPANQS 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3692 132 ProSitePatterns NF-YB/HAP3 subunit signature. 39 55 IPR003956 GO:0005634|GO:0006355|GO:0043565
Glsi02g3692 132 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 72 IPR003958 -
Glsi02g3692 132 MobiDBLite consensus disorder prediction 96 124 - -
Glsi02g3692 132 FunFam Nuclear transcription factor Y subunit B-6 1 115 - -
Glsi02g3692 132 SUPERFAMILY Histone-fold 5 117 IPR009072 GO:0046982
Glsi02g3692 132 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Glsi02g3692 132 PRINTS CCAAT-binding transcription factor subunit A signature 36 54 - -
Glsi02g3692 132 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Glsi02g3692 132 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 2 126 IPR027113 GO:0001228|GO:0006355|GO:0016602
Glsi02g3692 132 Gene3D Histone, subunit A 1 132 IPR009072 GO:0046982
Glsi02g3692 132 MobiDBLite consensus disorder prediction 96 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3692 Glsi-ChrGlsi02 83616828 83617226 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3692 4 129 CCAAT-HAP3 Transcription Factor Family AT1G09030 62.500 4.89e-59 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Glsi02g3692 CBFD_NFYB_HMF 5.9e-25 CL0012