Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3689 ATGTCAAAAAACACAAGCGGTGACAGTGGGAGCTTCTCTATAGAGAACACCGGAGAAGGTGCAGTTAAACAGCCATCGGAGCTACTGAGTCAGTTTCATAGTCCAAATTCTCTTACTTCAACTACAACTAATAGCAATGGTTCCAACACAAATTCACAACAGCCACTTCCATCTGTTAAGAGGAAGAGAAACCAACCGGGAAATCCAGATCCAAGTGCTGAAGTCATTGCTCTATCACCAAAGACCCTTATGGCCACAAACCGATTCATTTGTGAAATTTGCAACAAAGGGTTTCAAAGGGATCAAAACCTCCAACTGCACCGGCGAGGCCACAACCTGCCATGGAAGCTAAAGCAAAGAACCAGCACAGAAGTTCGAAAGCGGGTCTATGTTTGTCCAGAACCCTCATGTGTCCATCACAACCCAACTCGAGCACTAGGTGATCTTACTGGCATTAAAAAGCACTTCTGTAGAAAACATGGCGAGAAGAAATGGAAATGTGAGAAATGCTCCAAGAAATACGCAGTTCAATCTGACTGGAAAGCCCATTCAAAGATCTGTGGTACAAGGGAATACAAATGTGATTGTGGCACCATCTTTTCCAGAAGAGATAGCTTCATCACCCATAGAGCTTTCTGTGACGCCCTAGCTGAGGAAAATAACAAAGCCAATGAAAGACAATTGCCAAAAATGAGTTCGAGCTTGCAGGGCCAACAAATCCCAAACCTCGTTTGCTCGTTACCATTCAATACCAATCCCAACCCACAAATTGGGACATCCGAATTTAGCCATCCCGATAACAAGCATCCATTATCACTCCTTCACGAGCTCATGCCAATGCCTGCAAAGCCCTTTAACAGTATGGCTGCTTCAGGAACCGTATTCCCGAGAAGCCTTTCATCTAGCTCCTCACCATCTCTTCAACTAAACGTGTTGGAAGAAAATGCCCACCAACTAGCTGCCGCCTCACCGCACTTGTCTGCCACGGCACTGCTGCAGAAGGCTGCCCAAATGGGAGCAACTGTGAGCAATGGCAGCGCTATGAACTCTTCCATGGCGGAAAAGGGTTTCGTCACAAGCATGGCACCTCCATCCTTTGGTGCTGTACAACCTCCTCCAAATGGGCATTCTTTCATGAACCACTTTATGCAGAATGGACAACAGGATATTTCTTCTCAGTATTTCAATGCGAGTGGGATGGCTGGTAATAGTGTTGGAATGAACGGTGTGGATATGTTTAACGCTATCTTGGATCAAAGTAAAGCTTTCTCCAAGATCATAGAGGAGAATAATAGAAGCAATAATGGAGTTTTGCATGGTGGAAATGCAATTAGTGGTGGCTCAAGTAGCGCTATTGGTGGAACTAAAGGAAGCGGAGATGTGATGACTCTGGACTTCTTGGGGATAGGAGGAGGTAGTGGTGGTGCACATGGTAATTTCTATGGGACCCAACAGGCAGAAAAGGCTGCAAGAGATGAGGTTTGGAGAAATTGGTCAACCAAGAATGCTGGCTTTGAATCATTCTCAGCCACAAGCAGCATCAATTGA 1548 0.4548 MSKNTSGDSGSFSIENTGEGAVKQPSELLSQFHSPNSLTSTTTNSNGSNTNSQQPLPSVKRKRNQPGNPDPSAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTEVRKRVYVCPEPSCVHHNPTRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANERQLPKMSSSLQGQQIPNLVCSLPFNTNPNPQIGTSEFSHPDNKHPLSLLHELMPMPAKPFNSMAASGTVFPRSLSSSSSPSLQLNVLEENAHQLAAASPHLSATALLQKAAQMGATVSNGSAMNSSMAEKGFVTSMAPPSFGAVQPPPNGHSFMNHFMQNGQQDISSQYFNASGMAGNSVGMNGVDMFNAILDQSKAFSKIIEENNRSNNGVLHGGNAISGGSSSAIGGTKGSGDVMTLDFLGIGGGSGGAHGNFYGTQQAEKAARDEVWRNWSTKNAGFESFSATSSIN 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3689 515 Gene3D Classic Zinc Finger 143 224 - -
Glsi02g3689 515 FunFam protein indeterminate-domain 5, chloroplastic-like 143 222 - -
Glsi02g3689 515 Pfam Zinc-finger double-stranded RNA-binding 89 111 IPR022755 -
Glsi02g3689 515 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Glsi02g3689 515 Gene3D Classic Zinc Finger 68 135 - -
Glsi02g3689 515 MobiDBLite consensus disorder prediction 1 61 - -
Glsi02g3689 515 FunFam protein indeterminate-domain 12-like 68 136 - -
Glsi02g3689 515 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 42 483 IPR031140 -
Glsi02g3689 515 MobiDBLite consensus disorder prediction 1 73 - -
Glsi02g3689 515 SUPERFAMILY beta-beta-alpha zinc fingers 88 185 IPR036236 -
Glsi02g3689 515 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 111 IPR013087 -
Glsi02g3689 515 SMART c2h2final6 89 111 IPR013087 -
Glsi02g3689 515 SMART c2h2final6 130 160 IPR013087 -
Glsi02g3689 515 SMART c2h2final6 165 185 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3689 Glsi-ChrGlsi02 83582103 83585065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3689 48 349 IDZ Gene Family AT3G50700 55.856 9.63e-119 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi02g3689 zf-C2H2_jaz 7.6e-05 CL0361