Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3687 ATGGATCATGCACGTTCGGGGAATGCCGAGGACAATGTGGGGATTCCAGATGATTTGCGGTGCAAGAGATCAGATGGGAAACAGTGGAGATGCACTGCTATGTCCATGCCAGATAAAACAGTCTGCGAGAAGCACTACATCCAGGCAAAGAAGAGGGCAGCTAATTCTGCAATGAGAGCTAATCTGAAGAAAGCTAAGAGAAAGTCATTAGGAGAGAGTGATATTTATCTGGATAGCAGGAGTGATGATTTTGATGTGCCACTCGCTAGTATGAGAGTTGGAGAACAGCATTCAACCTCAGGGAAGAAGTTCCTGGATAAGGTATCAAAAAATCAGTATCGCTATACACCAGAGACACAGGCCATAAGGAGTCCGTCTGTACATAACGTTCCAAAGCCAAATGAGGATTCACCAGATGATGTTCCACAGTATGAAGGGATCTGGATTGCTTCTGAGTCGCCTCCTGCTTCTGGCATGGATTCATCCAGGAAAATATCACAAAGGAGTTTAGACGTTAATGCTAAAATAGAATACTCTGATGGAAGTTCAGAATCCTCTGAAGACACTGGTGGGCAAACTTGCCATCAGTGTCGGACGAAAGGCAGAGACAGAGTTATTTGGTGCCTCAGATGTGATAGGAGAGGATACTGTGATGGCTGTATCTCTTCATGGTACTCAGACATATCATTGGACGAAATTCAGAAAATTTGTCCTGCATGCCGTGGTATCTGTAATTGCAAAGTTTGCTTACGTGGTGATAATTCAATAAAGGTCCGGATACGCGAGATACCTGTTCTAGATAAGTTACAGTATCTCCACTTACTGCTTTCTTCAGTGCTTCCTGTGGTGAAGCAGGTTCATCATGAGCAGTGTTTTGAAGTTGAACTTGAAAAGAAGTTGCGTGGTACTGAAATAGATCTTCCCAGGACAAAATTGAATGCAGATGAGCAGATGTGCTGCAATTTCTGTAGGATACCCATTACTGATTATCACCGACATTGTCCAAATTGTACATATGACTTGTGCCTTAGATGCTGTCGAGATCTTCGAGAAGCAAATGCAAATGAAGCTGAAGAAACCCCGCCAAAACAAGCAAAAATTTCTAATCGAAATGTATTAATCAAGTTTCCTAATTGGAGATCCAATCATGATGGCAGTATTCCGTGCCCCCCAAAGGAGTACGGGGGCTGTGGTTATTCGTCATTGAATTTAAGCCGCATTTTCAAGATGAATTGGGTTGCAAAATTGGTAAAAAATGTTGAGGAAATGGTTAGTGGATGCAGGATTAGTGACTCGAGTGATCCACTTGAAACTGGGTTGAATGATCTAAGACTTTGCCAATATTCTCATAGAGAGAATGGTGATGATAATTATCTTTACTGCCCAAACGCTGAAGATCTCAAAAATGATGGGATTGCCATTTTTAGAAAGCACTGGAAAACTGGCGAACCCATCATTGTTAGACAAGTATTTGATAGGTCATCCATTTCAAGTTGGGATCCAATGGTCATATGGAGAGGGATTCGAGACACAGCAGATGAGAAAATAAAAGATGAAAACAGAATGGTTAGGGCCATAGATTGCTTAGACTGGTCTGAGATTGATATAGAACTTGGTCAATTCATGAAAGGATATTCTGAGGGGCGTATCCAAGAAAATGGCTGGCCAGAAATGTTGAAGTTGAAGGATTGGCCTTCACCTAGTGCATCTGAAGAATTTTTACTGTACCAGAGACCTCAGTTTATCAGCAAACTGCCTTTACTTGAGTATATTCACTCCAAGTGGGGCCTTCTTAATGTTGCAGCTAAAATGCCTCATTACTCGTTGCAGAATGATGTAGGACCCAAGATTTATATATCTTATGGAATCAGTGAGGAACTTGGTCAAGGTGATTCAGTGACCAATCTTCACTTCAATATGCGAGACATGCTGTACCTTTTGGTCCATACATGTGAAGTTGAGCTGAAGGGATGGCAGAGAACTAAGATTGAAAAGATACAAAAAGCTTACAAGGAATCTGAGGTGAAAGAACCATACAGGGATCCCCAAATATGTTCAGGGGGGAGGTCAGCTGATTCATCAATTGGTCCAGAAGGTATTGGAGTGGATTTGGATTCAGACGAGAAGTCAGTTATGAATCAAGGGATTGAAATTTATTCTAGTGCTGAAGGGAATATGGTCAATTCTGAACTTCTAATCAGACAAAATGGTGATGTCTCTGAGAAAACACATTGTGGTGTTCATTGGGATGTTTTTCGCCGGCAGGATGTTCCAAAGCTGACTGAATATCTGAAAATGCATCAAAAGGAATTTGGGATGCAGAATGACTTAGGAAATGAATATGATACAAGGCCACTTTTTGATGGAGTTACTTTTCTCAACATACATCATAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCATGGTCATTTCAACAAAATTTGGGGGAAGCTATATTTGTTCCTGCTGGTTGTCCTGTCCAAGCACGAAATTTTCAGTCCACTGTTCAGTTGGGCCTTGATTTCTTATCTCCGGAAAGCTTGGGGGAGGCCGTAAGGCTGGAAGAGGAAGTCCGCTGTCTGCCAAATGAACATGAAGCAAAGCTTCAAGTATTGGAGGTTGGGAAGATATCTCTTTATGCTGCAAGTTCGGCCATCAAAGAAGTTCAGAAACTTGTTCTTGACCCAAAACTCGGTGCTGAGATTGGATATGGGGACCCCAATTTGACGGCAATGGTTTCTGAGAACTACGAGAAGATGGTCAAACGAAGGCAAATAACTTGTGCTTGA 2793 0.4189 MDHARSGNAEDNVGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKRKSLGESDIYLDSRSDDFDVPLASMRVGEQHSTSGKKFLDKVSKNQYRYTPETQAIRSPSVHNVPKPNEDSPDDVPQYEGIWIASESPPASGMDSSRKISQRSLDVNAKIEYSDGSSESSEDTGGQTCHQCRTKGRDRVIWCLRCDRRGYCDGCISSWYSDISLDEIQKICPACRGICNCKVCLRGDNSIKVRIREIPVLDKLQYLHLLLSSVLPVVKQVHHEQCFEVELEKKLRGTEIDLPRTKLNADEQMCCNFCRIPITDYHRHCPNCTYDLCLRCCRDLREANANEAEETPPKQAKISNRNVLIKFPNWRSNHDGSIPCPPKEYGGCGYSSLNLSRIFKMNWVAKLVKNVEEMVSGCRISDSSDPLETGLNDLRLCQYSHRENGDDNYLYCPNAEDLKNDGIAIFRKHWKTGEPIIVRQVFDRSSISSWDPMVIWRGIRDTADEKIKDENRMVRAIDCLDWSEIDIELGQFMKGYSEGRIQENGWPEMLKLKDWPSPSASEEFLLYQRPQFISKLPLLEYIHSKWGLLNVAAKMPHYSLQNDVGPKIYISYGISEELGQGDSVTNLHFNMRDMLYLLVHTCEVELKGWQRTKIEKIQKAYKESEVKEPYRDPQICSGGRSADSSIGPEGIGVDLDSDEKSVMNQGIEIYSSAEGNMVNSELLIRQNGDVSEKTHCGVHWDVFRRQDVPKLTEYLKMHQKEFGMQNDLGNEYDTRPLFDGVTFLNIHHKRKLKEEFGVEPWSFQQNLGEAIFVPAGCPVQARNFQSTVQLGLDFLSPESLGEAVRLEEEVRCLPNEHEAKLQVLEVGKISLYAASSAIKEVQKLVLDPKLGAEIGYGDPNLTAMVSENYEKMVKRRQITCA 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3687 930 MobiDBLite consensus disorder prediction 115 142 - -
Glsi02g3687 930 Pfam JmjC domain, hydroxylase 744 839 IPR003347 -
Glsi02g3687 930 MobiDBLite consensus disorder prediction 177 196 - -
Glsi02g3687 930 Pfam WRC 16 56 IPR014977 -
Glsi02g3687 930 ProSiteProfiles WRC domain profile. 15 59 IPR014977 -
Glsi02g3687 930 SMART cupin_9 574 860 IPR003347 -
Glsi02g3687 930 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 17 894 IPR045109 GO:0032454|GO:0033169
Glsi02g3687 930 SUPERFAMILY Clavaminate synthase-like 473 866 - -
Glsi02g3687 930 ProSiteProfiles JmjC domain profile. 567 860 IPR003347 -
Glsi02g3687 930 ProSiteProfiles Zinc finger RING-type profile. 194 241 IPR001841 -
Glsi02g3687 930 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 189 254 IPR018866 -
Glsi02g3687 930 Gene3D Cupin 456 869 - -
Glsi02g3687 930 MobiDBLite consensus disorder prediction 115 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3687 Glsi-ChrGlsi02 83573009 83580364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3687 16 56 GRF Transcription Factor Family AT3G13960 46.341 3.05e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Glsi02g3687 JmjC 2.1e-08 CL0029