Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3663 ATGAGGCTTACTGACGACGCACACTCTGGTGCGCCGCGGATGCATCTACCTATTCAATATGCCCTTGCAGCAAAGGTTCATGGCATTGTGCACATCAGATACCATGCTTATTTTCTTGTTGAGAAGTATGTTTGGGTTTTAGTCTTGAGATTCTCATCAGAAGATGTGTCTGCACAAAATCAAGTGAAGGCATCTGTTCAACGAAAAATACGACAAAGTATTGCTGAAGAGTACCCAGGACTTGAGCCTGTGTTAGATGATATACTTCCAAAGAAGTCCCCTCTTATAGTTGTTAAATGTCAGAACCATCTGAATCTTGTTCTAGTGAACAACGTACCTTTGTTTTTCAGTGTCCGTGATGGACCATACATGCCTACCTTGCGACTCCTCCATCAATATCCAAATATAATGAAGAAATTGCAAGTTGACCGTGGTGCAATAAAATTTGTCTTAGCGGGTGCTAACATAATGTGTCCTGGTCTCACATCTCCTGGGGGTGTTTTGGATGAGGCAGTGGAGGCAGAAACCCCTGTGGCGATCATGGCTGAAGGAAAGCAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACATAAAATCAATTAACAAGGGAATTGGGGTGGACAACTTGCATTATCTCAATGATGGACTTTGGAAGATTGGATTTGAGTTTCAAGATCTTGATCCAGCATCGTCCCAGCAGAGAGGCGGGAGCTCGTCTACACCCGAGGCAGCAATGGGGATCGATCTTAAGGCTGGTGGTAAGAGCAAAAAGGCTAAAAGAACAGCACCCAAGTCCAATGATATCTACCTTAAGCTCTTGGTCAAGCTTTATCGCTTCCTTCTCCGCAGAACTGGTAGCGATTTCAATGCTGTAATACTCAAGCGCTTGTTCATGAGCAAGGTTAAAAAGCCTCCACTTTCTTTGTCAAGGTTGATAAAGTTCATGGAGGGGAAGGAAGATAAGATTGCTGTGATTGTGGGTACTGTGACTGATGACGTACGAGCATATGATATTCCACCTTTGAAAGTTACAGCTCTCAGGTTTACTGAGACAGCACGAGCCAGAATAGAAAAGGCTGGTGGTGAGTGCTTGACATTTGATCAGCTGGCTCTTAAGGCCCCTCTGGGACAGAACACGGTCCTTCTTCGAGGCCCAAAGAATGCTCGTGAAGCCGTGAAGCATTTTGGTCCTGCTCCTGGTGTGCCACACAGCCACTCCAAGCCTTATGTGCGATCCAAGGGAAGGAAGTTTGAGAAGGCTAGAGGAAGGAGGAACAGTAGAGGATTTAGGGTTTGA 1308 0.4518 MRLTDDAHSGAPRMHLPIQYALAAKVHGIVHIRYHAYFLVEKYVWVLVLRFSSEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDILPKKSPLIVVKCQNHLNLVLVNNVPLFFSVRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGGVLDEAVEAETPVAIMAEGKQHALAIGFTKMSAKDIKSINKGIGVDNLHYLNDGLWKIGFEFQDLDPASSQQRGGSSSTPEAAMGIDLKAGGKSKKAKRTAPKSNDIYLKLLVKLYRFLLRRTGSDFNAVILKRLFMSKVKKPPLSLSRLIKFMEGKEDKIAVIVGTVTDDVRAYDIPPLKVTALRFTETARARIEKAGGECLTFDQLALKAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHSKPYVRSKGRKFEKARGRRNSRGFRV 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3663 435 ProSiteProfiles PUA domain profile. 137 217 - -
Glsi02g3663 435 Pfam PUA domain 139 216 IPR002478 GO:0003723
Glsi02g3663 435 SUPERFAMILY Ribosomal proteins L15p and L18e 268 387 IPR036227 -
Glsi02g3663 435 CDD PUA_MCTS-1-like 125 221 - -
Glsi02g3663 435 SMART pua_5 138 217 IPR002478 GO:0003723
Glsi02g3663 435 Gene3D - 51 229 - -
Glsi02g3663 435 MobiDBLite consensus disorder prediction 399 435 - -
Glsi02g3663 435 SUPERFAMILY PUA domain-like 137 222 IPR015947 -
Glsi02g3663 435 FunFam Malignant T-cell-amplified sequence 1 47 225 - -
Glsi02g3663 435 PANTHER 60S RIBOSOMAL PROTEIN L18 249 435 IPR000039 GO:0003735|GO:0005840|GO:0006412
Glsi02g3663 435 MobiDBLite consensus disorder prediction 412 435 - -
Glsi02g3663 435 NCBIfam uncharacterized domain 2 108 218 IPR004521 GO:0003723
Glsi02g3663 435 CDD MCT1_N 51 125 - -
Glsi02g3663 435 Pfam Pre-PUA-like domain 53 134 IPR041366 -
Glsi02g3663 435 Gene3D - 249 435 - -
Glsi02g3663 435 Pfam Ribosomal protein 60S L18 and 50S L18e 250 435 IPR021131 -
Glsi02g3663 435 FunFam 60S ribosomal protein L18 249 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3663 Glsi-ChrGlsi02 83365988 83376917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3663 251 435 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 77.957 1.66e-98 291