Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3652 ATGGCAGGGGAAGATGATATACATAGGAAGAGGAGATTCGCCGTCATTGGCGTCTCTACTTTCTTATTGGTGGCTATGGTGGTGGCAGTCACTGTGGGTGTGAGCATTAGCCAGAACGACGACACAAACGAAGAACCAAAGGATAACAACAAGACCCATGTGTCCAGCACAATGAAAGCAGTGACAGCCCTCTGCCATCCCACCGATTACAAGCAAGAATGCGAGGACAGCCTAAAATCCGATGCTGGAAACACCACGGACCCAAAAGAACTCCTTAAGATCGTCTTCAACAAAACCATTAAGACAGTGAGTGAGGGAATCCAGAAGACCCGTCTGTTGCAAGAAGTGGAGAAGGAACCCAGAGCTGGGATGGCACTTAACACCTGCACCCATCTCATGAGTCTTTCCATTGGAGAGTTCAGAAGGTCACTTGACAAGATGGGTGCCTTTGATCTCAACGACGTCGACGACATGTTCATGAACTTGAAGGTTTGGCTCAGCGGTGCCATCACCTACCAAGAAACATGCTTGGATGGGTTCGAGAACACCACCAGCCCTGCTGGTGAGCGAATGAAGCAAATCCTGCAAAGTGCCATGCACATGAGCAGCAATGTCCTTGCCATCATCAACGATTTCGCCAAAACTCTTGCAGAATTGAACATCACAAATCCAGCCTCACGCCGCCTCCTGGATCTCGATTCTGACAACAATCCCGTTCTTGGTCACGGCGACCTTGACATTCCTCTGTGGGCTACTCCTCGTTTGCGAAGGCTGCTTTCCACCAAACGCAAACTCAAGCCTAATGTGGTTGTAGCCAAAGATGGGAGTGGAAAGGTCAAAAGAATCAACGCCGCACTAAAGCTGGTGCCCAAGAAAAACAAGAAGCCATTCGTCATCTACATTAAGGCGGGAGTTTATCATGAGTATGTTCATGTCATGAGGAACATGACCAACGTCGTCATGATAGGCGATGGTGGAAAAAAGACGCGAATCACGGGCAAAAAAAACTTCATTGATGGGGTCAATACCTATAGAACCGCCACCGTTGCTGTTGAAGGAGATAACTTTATTGCCATCAAGATGGGTTTTGAGAACTCTGCCGGTCCCCAAAAACATCAAGCAGTGGCCCTGAGGGTGCAAGCTGACATGTCCATCTTCTACAAGTGCTCAATGGATGGCTACCAGGACACGCTTTATGCGCACGCCTTGCGGCAATTCTACCGGGACTGCACCATTTCGGGCACCATCGACTTCGTGTTCGGTGATGCAGTTTCGGTATTCCAGAATTGCACGTTCATGGTCCGGAAGCCTTTGGAAAACCAGCAATGCATCGTGACGGCACAAGGTAGAAAGGAGAGGCATCAACCGTCGGGCATAGTCATCCAAGGGGGGTCCATCGTGGCGGATCCCAAGTACTACCCGGTTAGGTTCACCAACCCAGCTTACCTGGCTCGTCCATGGAAGATTTATTCAAGAACCATCGTGATGAACACCTTCATGGATGACTTGATCCAACCCGAAGGGTTTATGCCATGGCAGGGGAATTTGGGGCTTGACACATGCTACTACGCCGAGTACAAGAACCGGGGCCCCGGTTCTGACAAGTCCAAGCGCGTTAAATGGCCAGGCATCAAGAAGAAGATCACAGCCGAACAGGCCGATAGTTTCACCCCAGTCAAATTCTTCAGGGGAGATAAGTGGATTAAGGCCCCTAGGATTCCTTACTCTTCCGGCATGTTGAAGTCCAAGGACTAG 1755 0.4986 MAGEDDIHRKRRFAVIGVSTFLLVAMVVAVTVGVSISQNDDTNEEPKDNNKTHVSSTMKAVTALCHPTDYKQECEDSLKSDAGNTTDPKELLKIVFNKTIKTVSEGIQKTRLLQEVEKEPRAGMALNTCTHLMSLSIGEFRRSLDKMGAFDLNDVDDMFMNLKVWLSGAITYQETCLDGFENTTSPAGERMKQILQSAMHMSSNVLAIINDFAKTLAELNITNPASRRLLDLDSDNNPVLGHGDLDIPLWATPRLRRLLSTKRKLKPNVVVAKDGSGKVKRINAALKLVPKKNKKPFVIYIKAGVYHEYVHVMRNMTNVVMIGDGGKKTRITGKKNFIDGVNTYRTATVAVEGDNFIAIKMGFENSAGPQKHQAVALRVQADMSIFYKCSMDGYQDTLYAHALRQFYRDCTISGTIDFVFGDAVSVFQNCTFMVRKPLENQQCIVTAQGRKERHQPSGIVIQGGSIVADPKYYPVRFTNPAYLARPWKIYSRTIVMNTFMDDLIQPEGFMPWQGNLGLDTCYYAEYKNRGPGSDKSKRVKWPGIKKKITAEQADSFTPVKFFRGDKWIKAPRIPYSSGMLKSKD 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3652 584 Gene3D - 262 579 IPR012334 -
Glsi02g3652 584 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Glsi02g3652 584 SMART PMEI_2 56 208 IPR006501 GO:0004857
Glsi02g3652 584 FunFam Pectinesterase 57 213 - -
Glsi02g3652 584 Pfam Plant invertase/pectin methylesterase inhibitor 60 208 IPR006501 GO:0004857
Glsi02g3652 584 NCBIfam pectinesterase inhibitor domain 55 210 IPR006501 GO:0004857
Glsi02g3652 584 CDD PMEI-like_3 63 214 - -
Glsi02g3652 584 PANTHER PECTINESTERASE 22 569 - -
Glsi02g3652 584 Pfam Pectinesterase 268 565 IPR000070 GO:0030599|GO:0042545
Glsi02g3652 584 FunFam Pectinesterase 262 579 - -
Glsi02g3652 584 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 212 IPR035513 -
Glsi02g3652 584 SUPERFAMILY Pectin lyase-like 266 578 IPR011050 -
Glsi02g3652 584 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 212 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3652 Glsi-ChrGlsi02 83223074 83224900 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3652 4 580 Carbohydrate Esterase AT3G05610 48.621 0.0 599