Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3645 ATGGCTATAACACACAACCTTAAACCCGCCTTTTTGGTCTACCCCTGCCAACATTTTCCTTCCTCGTTGTTCGCGTCTTCATTTTCCTTCAAAACCCATTCCAAAGCACCCTCATTTAGCTCCATTCCTTCGAGAATTTACCAACACCAGAACCCTCCTCCCACTCTCACCCGAAGACTCTTCCTTCCTTCAGTCTCAGGCATCTGGGACGCCTTAACCGGAGGCGGCAACAATGCCCGTGAAGCCGTACTTTCGATTCGACGGGGGATGCTTCTCTTCAGGCAGGGTGATGTCTCGGGGTCTTTGGCCGAGTTCGACAAGGCAATTGAGTTGGACCCTCGTCAAAAGGCATATCTTTGGCAAAGGGGGCTATCACTTTACTATCTTGATAGATTTGACGAAGGTGCAGAGCAGTTTCGGTTAGATGTTGCACAAAATCCTAATGATACAGAAGAATCCATATGGTGCTTTCTGTGCGAAGCTCAACTATATGGAGTGGATGAAGCAAGGAAACAATTTCTTGAGGTTGGCATAGACCCACGTCCCGTCATGAGGGAAGCATATAATTTGTTTAAAGATGGTGGGGATCCCGAAAAGCTGGTGGCTGCATTTTCTCAAGGAAGAGAAAATGAGTATTTTTACGCATCATTATATGCTGGGCTTTATTATGAATCTCAGAATGACTCGGATGCTGCTAAACATCATATACTAGCTGCTTTTCAGTCTCCTTATGGACAAAGGTCTGATGATTATATGGCTTCTCTTGCCAAGGTTCACTGTCTTTCTCGAAAGTGGTGTTGGCATATTCTCTGTCGCAAGCATAAAAAGTTGGATATTCTCTCGTGGGGAGATTCTGCTCGAGTATATGCCGTGTGCAAGTGCACTTTTAGTTCATGCACTTGTATGGTATTTGACCAAGTTGTCCTCATAGTTCTCGCCGCCAGTTTAGAGCTTTGGGAGGGATTTGCGATGTCATCTGAGCGGCTGATTGGTGCAATGTCGGAAACACTGTCAACTTCCCAGTCGTTCAGGAAATGCAGCAGCGAACCTACTTGGATATTTGAAGAATTGCCCAAGGCCACGATCGTTTCCGTTTCCCGACCAGAGACCGGAGATATTAGCCCAATCCTTCTCTCTTACACCATCGAGTTGCAGTACAAACAGTTCAAGTGGCGCTTATTGAAGAAAGCATCACAAGTTCTCTATTTACATTTCGCTTTGAAGAAACGTGCAATAATTGAAGAATTTCATGATAAGCAAGAGCAGGCAAGAGAATGGCTTCAAAGCTTAGGAATAGTAGATCAAACAGCGATGGCGCAAGATGATGAAGAACCTGATGACGGAGCTGTACCTTTACATCACGAAGGCAGTACTAAGATCAGATATGTTCCATCCATTGCTGCCCTACCACTCATTCGTCCATCACTAGGAAGGCAGCAGTCAGCTGCAGATAAAGCTAAAGTTGCAATGCAGGGTTACCTGAATCATTTTCTAGGAAACATGGATATTGTGAATTCTCGAGAGGTCTGCAAGTTTTTGGAGGTATCCAAGTTATCCTTTTTGCACGAATATGGACCAAAACTGAAAGAGGGCTATGTAATGGTGAAGCACCTATCAAATATCTCAAGGGATTCAGATGTAGCATGCTTTCCATGCAATTGGTTTGGTTGTTGTGATAACAACTGGCTCAAGGTATGGGCTGTTTTGAAACCTGGGTTTTTGGCCTTGCTGGATGATCCTTTCGACAACAAACCACTGGACATAATTGTTTTTGATGTTCTCTCATCATCAAAGGAAGACGGAGGGTCCCAAATATATTTGGCTAATTATATAAAGGAACGCAATCCTTTACGTTACACATTTATGGTTACTTGTGGAAATCGGAGTATAAGGTTGAGAACTACCAGCAGCGCTAAAGTTAAAGATTGGGTTACTAAAATTAACGAAGCTGGTCTTAGACCTCCAGAGGGTTGGTGTCATCCTCATTGTTTTGCTTCATTTGCTCCCACGAGAGGTTTGAATGAAGATGGGAGCCAAGCCCAATGGTTTATAGATGGGCAGGCAGCATTTGCCGCAATTGGTTCTTCAATTCAAGAAGCAAAGTCAGAGATCTTCATCACTGGATGGTGGCTTTGCCCAGAGCTGTATCTAAAACGTCCTTTTCACTGTTATTCTTCCTTCAGGTTGGACTTATTACTAGAAGAAAAAGCTAAACAAGGGGTTCAGATCTATATACTTCTCTATAAGGAGGTTTCTCTAGCTTTAAAAATTAACAGCTTGTACAGCAAGAGAAGACTCCTTGACATTCACGAGAATGTGAGGGTTTTGCGCTATCCTAACCATTTATCAACCGGTGTCTATTTATGGTCGCACCATGAAAAACTTGTGATTATTGATTACAAGATTTGCTATATTGGAGGATTAGATTTATGTTTTGGACGATATGACACAACAGAACATAAAGTGGGTGATTTCCCATCTGTAATATGGCCTGGAAAGGATTATTACAACCCAAGAGAATCTGAACCTAATTCTTGGGAAGACACCATGAGAGATGAATTGGATCGTGAAAAATATCCTCGTATGCCATGGCACGATGTTCATTGTGCTCTTTGGGGACCTCCCTGTCTTGATATTGCTAGGCACTTTGTTCAACGTTGGAACCATGCTAAGAGAACCAAAGCTCCAAATGAACTTTCCATTCCACTACTTATGCCTCACCACCACATGGTCATCCCTCATTACATGGGAAGAAGCAAAGAGATAGACATTAATGGAAGGAAAGAAGTTGACAGTCAGGATTCCTCTTCCTCACAATCACCACAGCAAGATATCCCCCTGCTTCTACCTCAAGAAGCTGGTGGGCTAGTTACTTATAATGGAGACCTTGACTTAAACAGAAACAATATGAATGACAATCTTATTGGTCATAGACATTTTTATGAAAACCAAAAACCTGACGATGAAACTTTATCATCTGGTACTGAGATGAGAGGTTTTCTAGATGAACTTGATCCTTTTAACTCGGAGACACAATCTGTAGTTGACACTACAGATGATTGGGGGGAAACACCTGAAGAAGATTACTGTGATGCCACTGCTATGGAATATAGACAAGTTGGTCCACGTACTACTTGTCGCTGTCAGGTAATCAGAAGTGTCAGTCATTGGTCTGCTGGAACAAGTCAGCCTGAAGAAAGCATTCATACTGCATATTGTTCTCTTATTGAAAAAGCAAAGCATTTTATCTATATTGAGAACCAGTTTTTCATATCAGGTCTGGCAACAGATGATATTATACAGAATCGTGTGTTGGAAGCATTATATAGGCGTATTTTACTGGCCCACAAAGAACAAAAACTTTTCAGAGTTATAATTGTGATGCCTCTCTTGCCTGGCTTTCAGGGTGGTCTGGATGATGGTGGCGCAGCAACTGTGAGAGCCACAACACATTGGCAGTATCGAACAATTTCAAGAAAAAAACACTCCATATTAGACAACCTTAAAGCTTTGCTTGGCCCTGAGACAGATGATTACATTTCTTTCTATGGTCTACGGTCTCATGGTAGACTTTATGAAGGTGGTCCTATGGTTACAAGTCAGGTATATGTACACAGCAAATTGATGATTATTGATGACCGTGCTGCTATAGTCGGATCATCAAATATAAATGACAGGAGTTTGCTTGGATCAAGAGACTCTGAGATTGGTGTGCTTATTGAAGACAAAGAGTATGTCCAATCATCTATGAATGGAAAGCCATGGAACGCTGGGAAATTTTCCTATAACCTGCGTTGCTCCCTTTGGTCTGAGCACCTTGGTCTGCATACTGGAGAGATCAGTAAAATCAGTGATCCAGTGGCAGATACAACCTACAAGGACTTATGGTCGGCAACTGCAAAGGAAAATACTAGGATATTCCATGAGGTCTTCGCTTGCATACCCAATGATGAGATACACTCCAGAGCTGCACTTCGGCAAAACATGGCTCAGTGGAAGGAGAAACTTGGTCATACCACCATAGACTTGGGAATAGCCCCTGAAAAGTTAGTGTACCATGAGAATGAAGAAATAAAACAAACAGACCCTTCAGATAGATTGAAGTCTGTAAAGGGACATCTTGTTTCCTTTCCTTTGGAGTTCATGCGTGAAGAAGATTTAAGACCAGTTTTCAATGAGAGTGAGTTCTATGTATCTCCTCAAGTATATCATTAA 4215 0.4228 MAITHNLKPAFLVYPCQHFPSSLFASSFSFKTHSKAPSFSSIPSRIYQHQNPPPTLTRRLFLPSVSGIWDALTGGGNNAREAVLSIRRGMLLFRQGDVSGSLAEFDKAIELDPRQKAYLWQRGLSLYYLDRFDEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARKQFLEVGIDPRPVMREAYNLFKDGGDPEKLVAAFSQGRENEYFYASLYAGLYYESQNDSDAAKHHILAAFQSPYGQRSDDYMASLAKVHCLSRKWCWHILCRKHKKLDILSWGDSARVYAVCKCTFSSCTCMVFDQVVLIVLAASLELWEGFAMSSERLIGAMSETLSTSQSFRKCSSEPTWIFEELPKATIVSVSRPETGDISPILLSYTIELQYKQFKWRLLKKASQVLYLHFALKKRAIIEEFHDKQEQAREWLQSLGIVDQTAMAQDDEEPDDGAVPLHHEGSTKIRYVPSIAALPLIRPSLGRQQSAADKAKVAMQGYLNHFLGNMDIVNSREVCKFLEVSKLSFLHEYGPKLKEGYVMVKHLSNISRDSDVACFPCNWFGCCDNNWLKVWAVLKPGFLALLDDPFDNKPLDIIVFDVLSSSKEDGGSQIYLANYIKERNPLRYTFMVTCGNRSIRLRTTSSAKVKDWVTKINEAGLRPPEGWCHPHCFASFAPTRGLNEDGSQAQWFIDGQAAFAAIGSSIQEAKSEIFITGWWLCPELYLKRPFHCYSSFRLDLLLEEKAKQGVQIYILLYKEVSLALKINSLYSKRRLLDIHENVRVLRYPNHLSTGVYLWSHHEKLVIIDYKICYIGGLDLCFGRYDTTEHKVGDFPSVIWPGKDYYNPRESEPNSWEDTMRDELDREKYPRMPWHDVHCALWGPPCLDIARHFVQRWNHAKRTKAPNELSIPLLMPHHHMVIPHYMGRSKEIDINGRKEVDSQDSSSSQSPQQDIPLLLPQEAGGLVTYNGDLDLNRNNMNDNLIGHRHFYENQKPDDETLSSGTEMRGFLDELDPFNSETQSVVDTTDDWGETPEEDYCDATAMEYRQVGPRTTCRCQVIRSVSHWSAGTSQPEESIHTAYCSLIEKAKHFIYIENQFFISGLATDDIIQNRVLEALYRRILLAHKEQKLFRVIIVMPLLPGFQGGLDDGGAATVRATTHWQYRTISRKKHSILDNLKALLGPETDDYISFYGLRSHGRLYEGGPMVTSQVYVHSKLMIIDDRAAIVGSSNINDRSLLGSRDSEIGVLIEDKEYVQSSMNGKPWNAGKFSYNLRCSLWSEHLGLHTGEISKISDPVADTTYKDLWSATAKENTRIFHEVFACIPNDEIHSRAALRQNMAQWKEKLGHTTIDLGIAPEKLVYHENEEIKQTDPSDRLKSVKGHLVSFPLEFMREEDLRPVFNESEFYVSPQVYH 1404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3645 1404 FunFam Binding protein 76 256 - -
Glsi02g3645 1404 SMART pld_4 1200 1227 IPR001736 GO:0003824
Glsi02g3645 1404 SMART pld_4 787 814 IPR001736 GO:0003824
Glsi02g3645 1404 SUPERFAMILY Phospholipase D/nuclease 1031 1247 - -
Glsi02g3645 1404 CDD PH_PLD 504 650 - -
Glsi02g3645 1404 CDD PLDc_vPLD1_2_yPLD_like_2 1060 1244 - -
Glsi02g3645 1404 CDD PLDc_vPLD1_2_yPLD_like_1 680 824 - -
Glsi02g3645 1404 Gene3D - 522 653 IPR011993 -
Glsi02g3645 1404 Gene3D Endonuclease Chain A 671 909 - -
Glsi02g3645 1404 ProSiteProfiles PH domain profile. 526 652 IPR001849 -
Glsi02g3645 1404 Gene3D Tetratricopeptide repeat domain 79 258 IPR011990 GO:0005515
Glsi02g3645 1404 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 787 814 IPR001736 GO:0003824
Glsi02g3645 1404 ProSiteProfiles TPR repeat profile. 82 115 IPR019734 GO:0005515
Glsi02g3645 1404 SMART PH_update 527 654 IPR001849 -
Glsi02g3645 1404 FunFam Phospholipase 1033 1254 - -
Glsi02g3645 1404 Pfam Phospholipase D Active site motif 787 814 IPR001736 GO:0003824
Glsi02g3645 1404 Gene3D Endonuclease Chain A 1023 1263 - -
Glsi02g3645 1404 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1200 1227 IPR001736 GO:0003824
Glsi02g3645 1404 SUPERFAMILY Phospholipase D/nuclease 642 907 - -
Glsi02g3645 1404 Pfam PLD-like domain 1073 1247 IPR025202 -
Glsi02g3645 1404 SUPERFAMILY PH domain-like 558 650 - -
Glsi02g3645 1404 PANTHER PHOSPHOLIPASE D 479 1390 IPR015679 -
Glsi02g3645 1404 SUPERFAMILY TPR-like 87 233 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3645 Glsi-ChrGlsi02 83175829 83187917 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3645 353 1404 Phospholipase D Gene Family (Wang group) AT3G05630 65.762 0.0 1410