Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3634 ATGGCGCTACATGGAAGCCTTTCGCTCGCTCCAAAGCTGGCGCCATTTTTGAACCCATGGTTCGGAGCCGAAGGCTTGTGCCCTACATTGAATGATCAAGTGATGCCTTTATGCCTCAAACTCAAACAAAAGCATGTGAATGATCAAAGTTCACAAAAGCTGAATGCTCAAGTTCCTTCTTGGCCTCGCTTTCGCTTGGTTAGATCTTTAGAGGCAATTGGTGCAAGGATAAATTTTGGCCCATATGAGCGCAACCCACACACTGTGGGCCTCGAGGAATGTTTAAAGTCCATTGGGCTTAACAAGCCAATTCCATCAATGCCGGCCATAACAGAACAGATGGTAAGGGGAGGAAACGTTAGTAGCAAACGCAATTTCAGAAGAAGGGTTCCGTCAAAGGAAGGGGTTTCTGATGATTCGGATGAGGACTATGTGGTTCCGGATGAAGGTAGAGATGTGTCTGATTTTTCTGAGGATTCTTACCATTCTTTAGATGGATGTACATCAGAGGAGAGTTTTGATAATTTTGTAGAGGATGAGGAGGAGGAAATTGAAGGAATCAAGAATTTCAGGAGATCGAAGACAAAAAATGGTGTTTGTGGCCGACTTAAAATTGGCAGTAAAGCCTCACGAAAGAGGGGAAGGATGTCATATGCAGAACAACTAGATGAGGGCAAAGAAGAAGAAGAGGAAGATGAATACAAGGAAGAGGATGCAGATGAGGATGAGGAAGAGGATGTGGATGAGGATTTTGATTATGATGATGATGAGGAATTTACACCAGAGGAAGAAGATTATTCAGATGAGGAAGAAGAACTGAGGGGTAGAAAGAAGAAAAGTAATAGCGTAAAAATGGGCAAAAAGGTTTTGCAGAAGCGGGTTTCTATTACTTCTAGAGGTCGTAAAAGAAGGAGGAAACCTAGAGCTGCAAGGAAACCCTTGAGCAAGAAAAGAAGAAAGAACGGAGGGTTGAGGAGGAAAGTAAAATGTGATGATGAAGGTGATTCAATAGATAATAGGCCAACCATCAGAACAAAGAGTAAGAAAAAACCAAGTCGAAAAAGGAGAAGAGTTCTTGCTGATTCAGATTCAGATTGTGTGTCATTCGGATCATCAGATTATGAGTATACCATCTCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCTGAGGAATTGTGTGGAATTTTGAGAACTAACTTGAGGAGTTCATCCCTTCTGATTAAAAATGAAGAGGTTAGAGTCCATGAAGATATACATCCGCAAAGGAAACCTCCAGTTCGGAAAGGTAAGGAAAAGATAGAGGAACTTCAAGGAAGAAAGGGTAAGAGCAACGTAGAGGATTTAAAAAGTGAGGTAGGAAAGCAGGTGTGCGGAATTTGTTTTTCTGAGGAAAATAAAAGAAGAGTAAGGGGAGTATTAAATTGTTGCACACACTATTTCTGTTTTGCTTGCATAATGGAGTGGGCAAAGGTGGAATCCCGATGCCCTTTGTGTAAGCAGAGATTTCAGACAATCAGTAAACCTGTACGATCAACGGCAGGGATTGATTTGAGAGGATCAGTGATACAAGTTCCTGAACGTGATCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATCGATCCTTATGAGTATGTAATTTGTTCAGAGTGCCATCAAGGTGGAGATGATGACCTCATGTTACTGTGTGATCTCTGTGATTCACCTGCACACACTTATTGTGTTGGTCTGGGTCGGGAAGTACCTGAAGGTAATTGGTATTGTGATGGTTGTAGACCAGTTGCATTGGGATCTTCAAGTTCCCAAGTTCAAGAATGTGCAGCTGATCCTAGGGTGACAATTCAGAGCTTGCCTGGCAGACCATCACCTGTTGGGCATGCACGAGAAAGTATAGACCTCAACTTGATGTCTTCTCCTCGTACATCTCTCACTCAAGGATTTGGGAATCTTTCTTCTTCTAGATTTTCTGGTAGAAGTGTTGACGGAGCTTCTCCAGTATCTGGAGGAGGGGCACCAACTTTATCAGAGAGGCGCTGGATACACCGTCAAATTCAGCAATTGCTTTCAATAGATAGAATGACTTCTACAACTGGCAGATCTAATGGAATTTCGGCTACCAGTTCAACTGGTAACTTATATAGCTCTCAAATTGATCAAAGTAGGGACACAACCACTCAAGATACAAGGACACAGGATGTGGGAACATCTTATCACAGATTCTTTGAGGAGAGATTATGCAACAATACCTCTTCATTAATGCAGAATGGTGATTTATTCTCCATGAGATTAAACAATTCAAGGAGGCCGGTAGTTCAAGATTCAACTTTGTTTACCAACAGAGCTATGAATGGGGCATTGTGGCCTGGACTTGTGGGGACACCCTCTCTATCAGATTATGAACAAGTCCATCAACTCAGCAGCAGTTCAAACTTCGTTACTGATGGTAGCATGCCCTCTGCTATTAGAGAAGAGAGTAACATTCACATTGCTAAGGAACAATTGTCATCAATGGTTAAAAGCCACCTGAATAGATTGTCACAAGATATTGATTTAGGCCACAGTACTACCAAGGACATCACAAGGGTTTCTCTACACACCATACTAGCAGCTTGTGGTCTTGAGCACAGCAAGAGTGAGGTTTGCGCTGTGCCCCCACCATCAGCTTGTCCCCACATTGAACTAATGGCTGGTGGACAAACGAGTCTGATTAAAGGCTGCTGCTCATCTTGCTTTGATTCTTTTGTAGGAGATGTGGTGAAGAGGATCATGGACACAAGAATGTCACAGTGGTTACGGTTAGGTCTTTAG 2814 0.4268 MALHGSLSLAPKLAPFLNPWFGAEGLCPTLNDQVMPLCLKLKQKHVNDQSSQKLNAQVPSWPRFRLVRSLEAIGARINFGPYERNPHTVGLEECLKSIGLNKPIPSMPAITEQMVRGGNVSSKRNFRRRVPSKEGVSDDSDEDYVVPDEGRDVSDFSEDSYHSLDGCTSEESFDNFVEDEEEEIEGIKNFRRSKTKNGVCGRLKIGSKASRKRGRMSYAEQLDEGKEEEEEDEYKEEDADEDEEEDVDEDFDYDDDEEFTPEEEDYSDEEEELRGRKKKSNSVKMGKKVLQKRVSITSRGRKRRRKPRAARKPLSKKRRKNGGLRRKVKCDDEGDSIDNRPTIRTKSKKKPSRKRRRVLADSDSDCVSFGSSDYEYTISEEEREQVREAEELCGILRTNLRSSSLLIKNEEVRVHEDIHPQRKPPVRKGKEKIEELQGRKGKSNVEDLKSEVGKQVCGICFSEENKRRVRGVLNCCTHYFCFACIMEWAKVESRCPLCKQRFQTISKPVRSTAGIDLRGSVIQVPERDQVYQPSEEELRSYIDPYEYVICSECHQGGDDDLMLLCDLCDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQVQECAADPRVTIQSLPGRPSPVGHARESIDLNLMSSPRTSLTQGFGNLSSSRFSGRSVDGASPVSGGGAPTLSERRWIHRQIQQLLSIDRMTSTTGRSNGISATSSTGNLYSSQIDQSRDTTTQDTRTQDVGTSYHRFFEERLCNNTSSLMQNGDLFSMRLNNSRRPVVQDSTLFTNRAMNGALWPGLVGTPSLSDYEQVHQLSSSSNFVTDGSMPSAIREESNIHIAKEQLSSMVKSHLNRLSQDIDLGHSTTKDITRVSLHTILAACGLEHSKSEVCAVPPPSACPHIELMAGGQTSLIKGCCSSCFDSFVGDVVKRIMDTRMSQWLRLGL 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3634 937 MobiDBLite consensus disorder prediction 118 169 - -
Glsi02g3634 937 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 434 516 IPR013083 -
Glsi02g3634 937 MobiDBLite consensus disorder prediction 325 345 - -
Glsi02g3634 937 Pfam PHD-finger 549 595 IPR019787 -
Glsi02g3634 937 MobiDBLite consensus disorder prediction 416 438 - -
Glsi02g3634 937 ProSiteProfiles Zinc finger PHD-type profile. 547 596 IPR019787 -
Glsi02g3634 937 MobiDBLite consensus disorder prediction 694 733 - -
Glsi02g3634 937 Pfam Ring finger domain 456 499 IPR001841 -
Glsi02g3634 937 SMART PHD_3 549 594 IPR001965 -
Glsi02g3634 937 CDD RING-HC_Topors 455 502 - -
Glsi02g3634 937 ProSiteProfiles Zinc finger RING-type profile. 457 499 IPR001841 -
Glsi02g3634 937 MobiDBLite consensus disorder prediction 294 324 - -
Glsi02g3634 937 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 522 597 IPR013083 -
Glsi02g3634 937 SMART ring_2 457 498 IPR001841 -
Glsi02g3634 937 MobiDBLite consensus disorder prediction 203 362 - -
Glsi02g3634 937 PANTHER F18C1.6 PROTEIN 247 928 - -
Glsi02g3634 937 SUPERFAMILY RING/U-box 456 505 - -
Glsi02g3634 937 SUPERFAMILY FYVE/PHD zinc finger 519 595 IPR011011 -
Glsi02g3634 937 MobiDBLite consensus disorder prediction 223 269 - -
Glsi02g3634 937 ProSitePatterns Zinc finger RING-type signature. 476 485 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3634 Glsi-ChrGlsi02 83088682 83096625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3634 544 593 C2H2 Transcription Factor Family AT3G01460 48.077 6.74e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi02g3634 PHD 6.3e-09 CL0390