Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3631 ATGCGAGTGGCTTGGGTGCTTTATTTAGCTACGTACACTACTACCACCACCATCACAATCGCCGCCTCTGTCTCCATTTCTCTTTTCGGTGATTCGGTGAGTGTTATTCGGCGCTATGTCTTGATTCTTATACAGCAGTTGTCTTCTGAGGAATTGAGTGAGAATAAGAAATGCTGTACTGATTGCAAAACCACTAAGACCCCACTCTGGAGAGGAGGACCAGCTGGGCCCAAGACCCTGTGCAACGCTTGCGGGATTAGATACAGGAAGAAAAGGGTTTCTATGGTGGAACTAAACAAAGGACAAGAGAGGAAAAGAGAGAGAGCCCGAAGTCGAGGAGGTAAAGCCGTTGGTGATGGTGGCAACGATTTGAGGGAATCTTTGAAAATTGAGTTAATGGCATTGGGTGAGGAGGTTTTGCTGCAACGGTCGCCCTCAGTTGTGAAGAAGCAGAGGAGGTTAGGGGAGGAGGAACAAGCCGCTGTTTGCTTGATGGCCTTGTCCTGCGGCTTTGTTTTCGCTTAG 525 0.4857 MRVAWVLYLATYTTTTTITIAASVSISLFGDSVSVIRRYVLILIQQLSSEELSENKKCCTDCKTTKTPLWRGGPAGPKTLCNACGIRYRKKRVSMVELNKGQERKRERARSRGGKAVGDGGNDLRESLKIELMALGEEVLLQRSPSVVKKQRRLGEEEQAAVCLMALSCGFVFA 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3631 174 PANTHER OS01G0976800 PROTEIN 48 173 - -
Glsi02g3631 174 Gene3D - 54 116 IPR013088 GO:0006355|GO:0008270
Glsi02g3631 174 MobiDBLite consensus disorder prediction 99 114 - -
Glsi02g3631 174 SMART GATA_3 53 105 IPR000679 GO:0006355|GO:0043565
Glsi02g3631 174 MobiDBLite consensus disorder prediction 99 118 - -
Glsi02g3631 174 CDD ZnF_GATA 59 106 IPR000679 GO:0006355|GO:0043565
Glsi02g3631 174 ProSitePatterns GATA-type zinc finger domain. 59 84 IPR000679 GO:0006355|GO:0043565
Glsi02g3631 174 ProSiteProfiles GATA-type zinc finger domain profile. 53 89 IPR000679 GO:0006355|GO:0043565
Glsi02g3631 174 Pfam GATA zinc finger 59 93 IPR000679 GO:0006355|GO:0043565
Glsi02g3631 174 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 56 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3631 Glsi-ChrGlsi02 83071767 83073268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3631 49 168 C2C2-Gata Transcription Factor Family AT3G06740 53.333 5.64e-35 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi02g3631 GATA 6.9e-18 CL0167