Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3608 ATGGACGATATTTACAGGTTAAACCCTATCGCATCTTGTTCGGATGACGTTGGTACAGCTGGGAACGTTTCTTCTTCTGAATTGCATCTTGGACCGGCGGTTAATAACTATCTCCAGCTGGAAGCGCCTGAACCGGAAGTAGCCGGGTCAGACATGCCGGATCAGACGATGAAAACCCAAATCGCCAATCACCCTCTTTATCCAAATTTAGTATCTGCATACATAGAATGCCAAAAGGTTGGAGCTCCGCCAGAACTAGCGTCTCTTCTCGAAGAAATAGGTCGGGATAACCACTCCATCAATGCTCGCCGTCACATAGGGGATGATCCTGAACTTGACGACTTCATGGAATCATACTGCGAAGTTCTTCATAGATACAAAGAGGAGTTGTCCAAGCCCTTCAACGAAGCGACTTTGTTCTTGAGCAGTATCGAATCGCAACTCAGCAACCTTTGCAAGGGAACATTAACAAAGTCATCAGAAGATCAGGCAGGTATGACTTCGGAGGAGGAATTAAGTTGTGGGAACGTGGAAGTGGTGGAAGGTAATGGATCTTCTGGGACTTGTCAAGATGATCAAGAGATTAAAGAAATGCTTCTTCGGAAGTACAGTGGCTATCTTGGCAGTCTGAGAAAGGAATTTTTGAAGAAAAGGAAAAAGGGGAAGCTACCAAAGGATGCAAGGATGGCGCTGCTCAACTGGTGGAGCGCCCACTACAGATGGCCTTATCCTACGGAGGAGGAAAAAATGAAGCTATCAGAAACGACTGGACTGAATCAAAAGCAGATCAATAATTGGTTTATCAATCAGAGGAAACGGCATTGGAAACCATCTGAAGATATGAGATTTGCGATTATGGAGGGTGTTAGTGGGGGACCCTTCGGAGGCCCTATGTACTTTGGTTCTGGAGGTGGACCTCAACGGAATCATCGTTTCTGA 939 0.459 MDDIYRLNPIASCSDDVGTAGNVSSSELHLGPAVNNYLQLEAPEPEVAGSDMPDQTMKTQIANHPLYPNLVSAYIECQKVGAPPELASLLEEIGRDNHSINARRHIGDDPELDDFMESYCEVLHRYKEELSKPFNEATLFLSSIESQLSNLCKGTLTKSSEDQAGMTSEEELSCGNVEVVEGNGSSGTCQDDQEIKEMLLRKYSGYLGSLRKEFLKKRKKGKLPKDARMALLNWWSAHYRWPYPTEEEKMKLSETTGLNQKQINNWFINQRKRHWKPSEDMRFAIMEGVSGGPFGGPMYFGSGGGPQRNHRF 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3608 312 SMART KNOX2_2 102 153 IPR005541 GO:0003677|GO:0005634
Glsi02g3608 312 SUPERFAMILY Homeodomain-like 216 287 IPR009057 -
Glsi02g3608 312 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 59 284 - -
Glsi02g3608 312 Gene3D - 212 285 - -
Glsi02g3608 312 Pfam KNOX2 domain 105 152 IPR005541 GO:0003677|GO:0005634
Glsi02g3608 312 ProSiteProfiles 'Homeobox' domain profile. 214 277 IPR001356 GO:0003677
Glsi02g3608 312 Pfam Homeobox KN domain 234 273 IPR008422 GO:0003677|GO:0006355
Glsi02g3608 312 SMART ELK_2 194 215 IPR005539 GO:0003677
Glsi02g3608 312 Pfam ELK domain 194 215 IPR005539 GO:0003677
Glsi02g3608 312 ProSiteProfiles ELK domain profile. 194 214 IPR005539 GO:0003677
Glsi02g3608 312 SMART KNOX1_2 55 99 IPR005540 GO:0003677|GO:0005634
Glsi02g3608 312 CDD homeodomain 226 278 IPR001356 GO:0003677
Glsi02g3608 312 SMART HOX_1 216 281 IPR001356 GO:0003677
Glsi02g3608 312 Pfam KNOX1 domain 56 98 IPR005540 GO:0003677|GO:0005634
Glsi02g3608 312 ProSitePatterns 'Homeobox' domain signature. 252 275 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3608 Glsi-ChrGlsi02 82928576 82931742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3608 42 294 Homeobox Transcription Factor Family AT1G23380 51.923 8.80e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Glsi02g3608 KNOX2 1.3e-24 No_clan