Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3602 ATGGCGTCTTTGGAACCAAACGTAGATTCAAGTAATTCAGATACGTTGCAAGAATCCAATCATAAAAAGCGCAGGAAAACCGGGGATGATGTCAACCAACAGATTTCGCTCCACCAGATTCCATGGAGATCCGAGACAGAGCAACGGATCTACTCCTCCAAGCTCGTCGAAGCTCTCCGCCGCGTTCTTCGTCGGAGTGCTTCTCCGACGGCCAAACCTAGTAGCGGTCGTGAAGTTCGCGACACCGCCGACAGAGTTCTAGCCGTGACGGCCAAGGGTAGAACTCGGTGGAGTCGGGCGATTCTGGCCACTCCACTCAGCCGCTGGAAGCTCCGGAGGCAGCATAAGAAGGTGAAGAAGGCGGTGAAAGGATTCAAGAAGCCGGAGATTAGGAGAGAAAGAAGGTTACCGGCTATGCAGAAGAAAGCGCGCGTTCTCAGCCGGTTGATTCCCGGTTGCCGGAAGGTGTCGTTTCCGAATCTTCTGGAAGAAACCACAGATTATATATCGGCCTTGGAGATGCAAGTTCGAGCCATGACGGCACTCAACGAGCTACTCACCGGTGGCGCGCCGGCCGATCGGCTCGAGTGGGCTCGACAGTGA 603 0.5473 MASLEPNVDSSNSDTLQESNHKKRRKTGDDVNQQISLHQIPWRSETEQRIYSSKLVEALRRVLRRSASPTAKPSSGREVRDTADRVLAVTAKGRTRWSRAILATPLSRWKLRRQHKKVKKAVKGFKKPEIRRERRLPAMQKKARVLSRLIPGCRKVSFPNLLEETTDYISALEMQVRAMTALNELLTGGAPADRLEWARQ 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3602 200 MobiDBLite consensus disorder prediction 1 15 - -
Glsi02g3602 200 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 172 IPR011598 GO:0046983
Glsi02g3602 200 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 189 IPR036638 GO:0046983
Glsi02g3602 200 CDD bHLH_AtIBH1_like 128 182 IPR044549 GO:0006355
Glsi02g3602 200 MobiDBLite consensus disorder prediction 1 32 - -
Glsi02g3602 200 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 43 186 IPR044660 GO:0006355
Glsi02g3602 200 MobiDBLite consensus disorder prediction 16 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3602 Glsi-ChrGlsi02 82860703 82861305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3602 3 179 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09250 44.845 1.68e-39 132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3602 02 82860703 82861305 Glsi11g0299 11 1985546 1986142 CCT
Glsi02g3602 02 82860703 82861305 Glsi11g0299 11 1985546 1986142 ECH
Glsi02g3602 02 82860703 82861305 Glsi02g3602 02 82860703 82861305 ECH