Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3570 ATGGGCGGAGGTGGAGCGACGCCTAATGCGGAGACGCAGTACTCGTCGGCGAAGACGTCGGTGTGGTGGGACATCGAGAACTGCCATGTCCCCAAAGGCTGCGATCCGCACGCCATCGCCCAGAACATTAGCTCGGCGTTGGTTCAGATGAACTATTGTGGGCCTGTTTCCATCTCCGCCTATGGCGATACTACTCGCATCACGGCCTCTGTACAGCACGCTCTCTCCAGTACCGGCATCTCCCTCAACCATGTTCCAGCTGGTGTTAAAGATGCTAGCGACAAGAAGATTCTTGTAGACATGCTGTTCTGGGCTGTGGATAATCCCGCACCTGCTAATTATTTATTAATTTCGGGTGACCGAGACTTCTCTAACGCTCTTCATCAATTGAGGATGAGGAGATATAATATTCTTCTTGCACAACCTCAGAAAGCATCTGCACCCCTTGTCGCAGCTGCAAAGAGTGTATGGCTTTGGACTAGTCTCATAGCTGGGGGACCTCCTCTAACTAATGGCGAATCACAACAAATTGGTAATAATAGCCTCCTATCAAGTTCTGACACCTCACAAAATCCAGTATCTAGTGGCTTTCAGATAAATCAACGCAGGGATTCCTTTTCTGAAGTTCATGTAGGAAATCATAAATTTCCAAATGCAGGAAGGGGTTTAGATTCTAGATACCAGGGGAAAACAAATTGGAGAAATTCAAGTCAATCTAATGGACCCAGAGCTTTGAATCCGCCAGTTGGACTTCAAGAAAATCATAGCAATATAAACTCTTATCGTCCTGGCAACTACAGCCCAACTGTTCCCCAAAGTAGATCTGCTCCAAATCTTGTTCATGGCAGTCCTGATCAGTTGTGGAGCAATAGCAGTAATATATCGGGCAATCATCAAAATCCTTATTCACAGCCTTTAAGACCAAATGGTTTTCCATTGCAACCTGCTTTTGTACCAAATAATTCATATCCGCCTAACTCCCATTCTTTTGCAACTTCACTAGTGCCTCCTAGAACTGGAGGTCCCAGCTTCACCTCAGGACCACTTACAAATGTGCCAGACATAGGTAATCTGAACATTTCTGGATATTCCAACAGTATTTATGATCCTCATAATTTTCAGCAACGGAGTGGGGAGCTGAAACAGAATACAAACAATAATGCTCCGCATCCTGTAAGGTCAATTGATGAACAAAATGGATATATGGTACATAGCACACAACAATTACACCATGTTCACTCTCATGGTCCACAATATCCATCTACATCTATGGCAGCAATGGGTAATAATAACCTTCCTGGTAATGGTTTGTGGGGATCTTCAGGATGTCCTAAACCTACTGAGTACGTACAAGGCCTTATTGGGGTAGTTTTACTTGTGTTGAACACACTAAAAAATGAAAAGATAATGCCAACCGAAGCAAATATAACTGATTGCATCCGTTATGGAGATCCCAAGCACCGCAACACTGATGTTAAGAAGGCTTTGGAGAGTGCTATTGAACAGCAGATGGTGGTGAAACAGAATTTAGGTTCTTTGCAGTTGTATATCGGTAAGAATGATAAACTTTGGAGGTGTGTAAACCCTATAGGTGGTAATCCTAATGATCACTCAAAAGAAACATGGGATGAAATCCAAAATTTTTTAACAACTCCTTCTGGAAGATTAGCAATAATGGGTACTCAATGCAAATACGAAGCAGGTACTGTGATAAAGAATATGTGCCTTAAGAATCTTTCTCTGGGAGATGTCCTTCAGATTTTGAACTTGCTGATTGCCCATAAAAAATGGATTGTGCATCGTCAGCCAGGATGGCAACCTCTTAACATTACTCTACCTCAGGCAAACTCTGATGTAACTGGTTGGGACTGA 1872 0.4322 MGGGGATPNAETQYSSAKTSVWWDIENCHVPKGCDPHAIAQNISSALVQMNYCGPVSISAYGDTTRITASVQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSVWLWTSLIAGGPPLTNGESQQIGNNSLLSSSDTSQNPVSSGFQINQRRDSFSEVHVGNHKFPNAGRGLDSRYQGKTNWRNSSQSNGPRALNPPVGLQENHSNINSYRPGNYSPTVPQSRSAPNLVHGSPDQLWSNSSNISGNHQNPYSQPLRPNGFPLQPAFVPNNSYPPNSHSFATSLVPPRTGGPSFTSGPLTNVPDIGNLNISGYSNSIYDPHNFQQRSGELKQNTNNNAPHPVRSIDEQNGYMVHSTQQLHHVHSHGPQYPSTSMAAMGNNNLPGNGLWGSSGCPKPTEYVQGLIGVVLLVLNTLKNEKIMPTEANITDCIRYGDPKHRNTDVKKALESAIEQQMVVKQNLGSLQLYIGKNDKLWRCVNPIGGNPNDHSKETWDEIQNFLTTPSGRLAIMGTQCKYEAGTVIKNMCLKNLSLGDVLQILNLLIAHKKWIVHRQPGWQPLNITLPQANSDVTGWD 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3570 623 Pfam OST-HTH Associated domain 562 616 IPR025677 -
Glsi02g3570 623 Pfam NYN domain 18 154 IPR021139 GO:0004540
Glsi02g3570 623 MobiDBLite consensus disorder prediction 228 307 - -
Glsi02g3570 623 MobiDBLite consensus disorder prediction 210 316 - -
Glsi02g3570 623 Gene3D - 9 161 - -
Glsi02g3570 623 CDD PIN_limkain_b1_N_like 18 142 - -
Glsi02g3570 623 MobiDBLite consensus disorder prediction 170 196 - -
Glsi02g3570 623 PANTHER LIMKAIN B LKAP 14 507 IPR024768 GO:0005777|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3570 Glsi-ChrGlsi02 82690581 82693170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3570 10 294 C2H2 Transcription Factor Family AT5G61190 53.497 1.30e-84 284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3570 02 82690581 82693170 Glsi02g3570 02 82690581 82693170 ECH