Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3558 ATGACTAGAGCAAGATTGAGGCTTCAATACATCACCAACGACGCTGTGAGAAAAGCAACCTTTAAGAAGAGAAAGGGTGGATTTTTCAAGAAGATTACTGAACTGACAACCCTGTGTGGGGTTGAGGCTTGCGCTATTATATATAGCCCCTTTGATCCTCGCCCAGAGGTGTGGCCATCAAACCCAGTGGGAGTCCAGCGCGTGATTTCCAGGTACAATATGATGCCTGACTTGCTTCCAACTCCAAGGAAGAAGATATTTAACCAAGTGACCTTCACCGAGGAGAGGATCACTAAAGCGAAGGAGCAGCTGAAGAGGCTTAGGAGAGATAACCGGGAGAAAGTAACCGACCTGATCATGGTGGAGTGTATCGGTGGGATGGGGCTGGAAAACTTGAGCATGCTTGATCTGAATGATACAGCATGGCTGGTTGAGAAGAAGATAGCGGAGATCAACAGGAAGATGCAGGAGATGGACAGAAAGCAGGCGGAGAACGACCAAGTCTATAGGCCAGAATTGCCACCTGCCCCCTCAGATGGGGAGATTAATGCTGATCAACGGTGGAATGCCAACATGAACTCTCGAAACTACTTGGCCTTTGGGGGAGATGATGAGATGCTGCAGTTACCGTTTGGAGATATCACCCAGAAAGAATATGATATTTGGTCTCAGATGTTCCCCTCCATGTTTTAG 693 0.4776 MTRARLRLQYITNDAVRKATFKKRKGGFFKKITELTTLCGVEACAIIYSPFDPRPEVWPSNPVGVQRVISRYNMMPDLLPTPRKKIFNQVTFTEERITKAKEQLKRLRRDNREKVTDLIMVECIGGMGLENLSMLDLNDTAWLVEKKIAEINRKMQEMDRKQAENDQVYRPELPPAPSDGEINADQRWNANMNSRNYLAFGGDDEMLQLPFGDITQKEYDIWSQMFPSMF 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3558 230 Coils Coil 90 117 - -
Glsi02g3558 230 MobiDBLite consensus disorder prediction 160 181 - -
Glsi02g3558 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Glsi02g3558 230 Coils Coil 144 166 - -
Glsi02g3558 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Glsi02g3558 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Glsi02g3558 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Glsi02g3558 230 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Glsi02g3558 230 PANTHER MADS BOX PROTEIN 5 154 - -
Glsi02g3558 230 Gene3D - 14 119 IPR036879 GO:0003677|GO:0046983
Glsi02g3558 230 FunFam Agamous-like MADS-box protein AGL80 13 101 - -
Glsi02g3558 230 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Glsi02g3558 230 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3558 Glsi-ChrGlsi02 82547122 82547814 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3558 1 182 Type I MADS-box Gene Family AT5G48670 44.809 7.26e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Glsi02g3558 SRF-TF 1.1e-15 No_clan