LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi02g3557	ATGACTAGAAAGAAGGTGAATCTCATGTATATCTCCAATGATGCTGCAAGAAAAACTACATTCAAGAAAAGGAAAAAAGGTCTCTTCAAGAAGGTGAGTGAACTCACAACACTGTGTGGAATTGAAGCATGTGCTATTGTTTTCAGTCCCTATGATTCTCAGCCAGAGATTTGGCCAGATCCTGTGGGAGCCCAACAGGTGATCGCAAGTTATCAGAATACGCCTCGGATGGATGAAAGCAGGAATTTGAACCAAGAGAGCTTTATCAGGCAAAGGATCACCAAAGTCAGTGACCAGCTCAACAAGCAGCGCAAGGAGAATCGTGAGAAAGAGATGACACTAGCGATGTTTCAGTGTGTGGAAGGGAAGAGGCTGGATGACTTGACGATGGTGGATCTGAACGATATCGAGTACTTGATTGAGAAGAACATAGAGGAGATCGACAAGAAGATGGAATGA	459	0.4379	MTRKKVNLMYISNDAARKTTFKKRKKGLFKKVSELTTLCGIEACAIVFSPYDSQPEIWPDPVGAQQVIASYQNTPRMDESRNLNQESFIRQRITKVSDQLNKQRKENREKEMTLAMFQCVEGKRLDDLTMVDLNDIEYLIEKNIEEIDKKME	152

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi02g3557	152	Coils	Coil	93	113	-	-
	Glsi02g3557	152	ProSiteProfiles	MADS-box domain profile.	1	49	IPR002100	GO:0003677\|GO:0046983
	Glsi02g3557	152	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	51	IPR002100	GO:0003677\|GO:0046983
	Glsi02g3557	152	PANTHER	MADS BOX PROTEIN	3	151	-	-
	Glsi02g3557	152	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Glsi02g3557	152	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Glsi02g3557	152	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Glsi02g3557	152	SUPERFAMILY	SRF-like	1	81	IPR036879	GO:0003677\|GO:0046983
	Glsi02g3557	152	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Glsi02g3557	152	Gene3D	-	13	118	IPR036879	GO:0003677\|GO:0046983
	Glsi02g3557	152	FunFam	agamous-like MADS-box protein AGL80	13	96	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi02g3557	Glsi-ChrGlsi02	82540435	82540893	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi02g3557	1	152	Type I MADS-box Gene Family	AT5G48670	53.247	1.03e-50	162

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Glsi02g3557		SRF-TF	1.5e-19	No_clan