Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3553 ATGCCTCTGTATGAGTTATACCGGCTGGCTAAAGCAAAGCTTGATTCGAAAGAGATAAACAGCACACGGGCAACAGATCAATCTTCCGCACCTGAGAATGACTTTTTTGAGCTGGTCTTGGAAAATGGTCAGATTTCGATGCAGGGAAAGTCAAGTAGAGCAAGAAAGAGCCCGGTATGCAAGAGTCTTCCATCTCACAGCGTACCTTCTCACAGTCCCAAGTCTCAAGATAAAGATGTAGCATTCGATATAAATACAAGGATGGGAAAATTTGGGGATTTAGACTCTGGATTAAATGAAATTCAAATGTCAGTTCCATCGGATGAAGTGGATTTGAGTCAAGATGAAGACATGATACCTTGGTTGAATTATACAATGGATGACTCTTTGCAACATGAATATAGTTCTGATTTCTTGCGTGAATTATCTGGGGTCAGCGTAAATGAGTTCCCTACCTCAGATAATTTTGCTCTAATGGATAAAAAAAGTAACTGTAATCAGGTATATAGGGAATCTCATAAAATTCCTCTGCGTGATGTTTCAAGTTCAGAACAAGCAAACCTTACCAATGGTGGTTCACCTGGAGAAGTTGAGATAACTAGACAAAAAGTGAGCACCAGTCAGTTATACCCACAATCATTTGCAGCAATGAGATCCAAAGTTCCAGATATCACCGAAAATAATACAAGTAATGCAATCCAGCACGCACCTTGTGGGGAAATCAGTCAGATTCCATCTGTCTCTAGTGGTTTTCATAGCTTAAATATGCAGAAGCAAGATCCAGTAATGCCCAGCAATAGTTCCAACATAATGAATTTCTCCCATTTTGCAAGACCTGCTGCTATTGTGAGAGCTAATCTAGAGAGCATCAGTTTGATGTCTGGTTTGTCTTCAGCTAGATCAGAAAGCATGGGAACTAAGAATAAAAATGTTGATGCAACTGGCAGCAATCCTCCTGAATCAACCCTTGTTGATTCAAGTGGTGAAAAGAAACCAACTATGAACTGCCAGCCGCTGATGGAGCTGTCAAAGGCTGAATTGAAACCCTCAGAGCCACAATCTCTCGAGCAGAATGCTGCTTCTGCCAAACAGTCTGACCCTGCCTGCAAAGAGGAGGATGCCTTTAATAATGATAAAATTTCCAATCAAATCCTTTGTGAGAGTGGCACTAAAGGAGAGACCGCTGTTGAAAACATTATGGAACCTGTTGTGGCTTCTTCCTCCATTTGCTCAGGCAATGGCATGAAGAGAGGTTCCGATGATCCAAATCAAAATTTGAAGCGAAAAAGTCTTGATACTGAGGATTCTGAGTGCCATAGTGAAGATGTAGAAGAAGAATCAGTGGGTATTAAAAAGGCAACTTCTGCACGAGGAAGTACAGGTTCCAAGAGAAGCCGTGCAGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGGATCAATGAGAAAATGCGCGCGTTACAAGAACTTATTCCCAATTGCAATAAGGTGGATAAAGCTTCAATGCTGGATGAGGCAATTGAGTATCTTAAAACACTTCAACTCCAAGTTCAAATTATGTCAATGGGAGCTGGTTTTTATGTGCCTCCAATGATATTAACTCCTGGAATGCAGCACATGCATGCTTCACATATGGCTCCATTCTCACCTATGGGAGTTGGGATGCAAATGGGGTTAGGAATGGGTTATGGGATGGGTATACCTGACATGAATAGTGGATCTTCTAGATTCCCAATGATTCAGGTGCCCCAAATGCAAGGAACTCATTTCCCTGTTTTACCTATGACTGGAACCACTGCTCTACATGGGATGGCAAGATCAAATCCTCAAATGTTTGGGTTTCCTGGTCAGGGACTTCCCATACCAATGCCACATCCTCCCATAGCTTCTTTGTCAGGAGGGCCTCTCATGAACCCATCAACTCCGGGACTAAATGCCTGTGCAGATGCAGGGCTTATGGAAACTGCAGATTTGGCTTCAGCCTCTGTCTTAAAGGATCCAATGCCAAATGTGAACTCACAAGTTATGCCAAGTACAGGTGGTAGTAACTCCACAACTCAGATGTCTGCTCAGGGTGAAGCAACAAATCTGCTACTCCTGGCAAAGAAGGATAACCTTGTGACTGCTAAATCTTGTTATGATTGA 2151 0.4245 MPLYELYRLAKAKLDSKEINSTRATDQSSAPENDFFELVLENGQISMQGKSSRARKSPVCKSLPSHSVPSHSPKSQDKDVAFDINTRMGKFGDLDSGLNEIQMSVPSDEVDLSQDEDMIPWLNYTMDDSLQHEYSSDFLRELSGVSVNEFPTSDNFALMDKKSNCNQVYRESHKIPLRDVSSSEQANLTNGGSPGEVEITRQKVSTSQLYPQSFAAMRSKVPDITENNTSNAIQHAPCGEISQIPSVSSGFHSLNMQKQDPVMPSNSSNIMNFSHFARPAAIVRANLESISLMSGLSSARSESMGTKNKNVDATGSNPPESTLVDSSGEKKPTMNCQPLMELSKAELKPSEPQSLEQNAASAKQSDPACKEEDAFNNDKISNQILCESGTKGETAVENIMEPVVASSSICSGNGMKRGSDDPNQNLKRKSLDTEDSECHSEDVEEESVGIKKATSARGSTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGFYVPPMILTPGMQHMHASHMAPFSPMGVGMQMGLGMGYGMGIPDMNSGSSRFPMIQVPQMQGTHFPVLPMTGTTALHGMARSNPQMFGFPGQGLPIPMPHPPIASLSGGPLMNPSTPGLNACADAGLMETADLASASVLKDPMPNVNSQVMPSTGGSNSTTQMSAQGEATNLLLLAKKDNLVTAKSCYD 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3553 716 MobiDBLite consensus disorder prediction 421 436 - -
Glsi02g3553 716 MobiDBLite consensus disorder prediction 408 474 - -
Glsi02g3553 716 FunFam Basic helix-loop-helix transcription factor 461 524 - -
Glsi02g3553 716 MobiDBLite consensus disorder prediction 47 77 - -
Glsi02g3553 716 MobiDBLite consensus disorder prediction 298 333 - -
Glsi02g3553 716 CDD bHLH_AtPIF_like 466 528 IPR047265 -
Glsi02g3553 716 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 466 515 IPR011598 GO:0046983
Glsi02g3553 716 SMART finulus 472 521 IPR011598 GO:0046983
Glsi02g3553 716 PANTHER TRANSCRIPTION FACTOR PIF3 1 691 IPR044273 GO:0003700|GO:0006355
Glsi02g3553 716 MobiDBLite consensus disorder prediction 346 375 - -
Glsi02g3553 716 Gene3D - 461 524 IPR036638 GO:0046983
Glsi02g3553 716 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 463 525 IPR036638 GO:0046983
Glsi02g3553 716 MobiDBLite consensus disorder prediction 453 467 - -
Glsi02g3553 716 Pfam Helix-loop-helix DNA-binding domain 470 516 IPR011598 GO:0046983
Glsi02g3553 716 MobiDBLite consensus disorder prediction 350 364 - -
Glsi02g3553 716 MobiDBLite consensus disorder prediction 298 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3553 Glsi-ChrGlsi02 82477771 82481645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3553 1 588 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 35.818 6.91e-67 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi02g3553 HLH 7.8e-14 No_clan